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WormBase Tree Display for Gene: WBGene00004272

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Name Class

WBGene00004272SMapS_parentSequenceD1037
IdentityVersion1
NameCGC_namerab-8Person_evidenceWBPerson451
Sequence_nameD1037.4
Molecular_nameD1037.4
D1037.4.1
CE30373
Other_namerab8Accession_evidenceEMBLAB112929
CELE_D1037.4Accession_evidenceNDBBX284601
Public_namerab-8
DB_infoDatabaseAceViewgene1E252
WormQTLgeneWBGene00004272
WormFluxgeneWBGene00004272
NDBlocus_tagCELE_D1037.4
PanthergeneCAEEL|WormBase=WBGene00004272|UniProtKB=G5EFC1
familyPTHR47980
NCBIgene171935
RefSeqproteinNM_058798.9
TrEMBLUniProtAccG5EFC1
UniProt_GCRPUniProtAccG5EFC1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrab
Allele (19)
StrainWBStrain00050661
RNASeq_FPKM (74)
GO_annotation (30)
OrthologWBGene00062318Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033040Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00147970Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00142282Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00158802Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00158546Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00121403Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00068981Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00223271Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12336Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1779Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4301Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6924Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1892Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16113Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13417Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21236Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5001Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16441Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00022.g1401Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rab-8Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold627.g6726Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00404.g10874Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08201Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002202Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10721Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_10157500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g552Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00177997Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00238331Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277792Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00285977Trichuris murisFrom_analysisWormBase-Compara
WBGene00287280Trichuris murisFrom_analysisWormBase-Compara
WBGene00296870Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001889Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0262518Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070424-36Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070620-16Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:7007Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:30273Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:96960Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2442982Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:621144Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628764Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
Paralog (32)
Structured_descriptionConcise_descriptionrab-8 encodes a rab related protein of the Ras GTPase superfamily; RAB-8 functions in sensory neurons in a common ciliary membrane trafficking pathway and in intestinal cells to regulated protein trafficking to the apical plasma membrane; rab-8 also affects ovarian morphology and function, thereby affecting fertility; rab-8 acts downstream of let-60 with respect to vulval development based on genetic analysis; RAB-8 reporter fusion proteins localize to trafficking vesicles in sensory neurons and to the apical membrane and sub-apical structures in the intestine.Paper_evidenceWBPaper00004697
WBPaper00037733
WBPaper00038154
Curator_confirmed (2)
Date_last_updated02 May 2014 00:00:00
Automated_descriptionEnables GTPase activating protein binding activity and ankyrin repeat binding activity. Involved in several processes, including embryonic genitalia morphogenesis; negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; and protein secretion. Located in apical part of cell and cytoplasmic vesicle. Expressed in body wall musculature. Is an ortholog of human RAB8B (RAB8B, member RAS oncogene family).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSD1037.4
Corresponding_transcriptD1037.4.1
Other_sequence (24)
Associated_featureWBsf649039
WBsf655264
WBsf664054
WBsf219164
WBsf219165
WBsf219166
Experimental_infoRNAi_result (19)
Expr_patternExpr9445
Expr11047
Expr14996
Expr14997
Expr1025538
Expr1032111
Expr1147350
Expr2015232
Expr2033466
Drives_constructWBCnstr00035596
WBCnstr00042076
Construct_product (11)
Microarray_results (25)
Expression_cluster (111)
Interaction (130)
Map_infoMapIPosition-2.90685Error0.010843
PositivePositive_cloneD1037Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (35)
RemarkSequence connection from [Kuwabara PE]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene