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WormBase Tree Display for Gene: WBGene00004049

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Name Class

WBGene00004049SMapS_parentSequenceY71F9AL
IdentityVersion2
NameCGC_nameparp-1Person_evidenceWBPerson236
Sequence_nameY71F9AL.18
Molecular_name (13)
Other_namepme-1
CELE_Y71F9AL.18Accession_evidenceNDBBX284601
Public_nameparp-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
218 Nov 2014 11:51:19WBPerson2970Name_changeCGC_nameparp-1
Other_namepme-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classparp
Allele (323)
StrainWBStrain00031749
RNASeq_FPKM (74)
GO_annotation (24)
OrthologWBGene00057125Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00063083Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00026940Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
WBGene00193896Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00191323Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00060320Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00060318Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00122861Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00092451Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00192772Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00270380Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00227298Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9678Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8427Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17624Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g7523Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9415Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1132Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7633Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15008Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21643Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g570Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g128Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17994Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g4175Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00284.g8457Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g1009Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g9555Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold627.g6887Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13980Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14098Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14099Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15583Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00879.g16393Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00925.g16805Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03302Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_03306Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_17234Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_17645Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000874Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_000880Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_010278Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_022105Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_022108Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08618Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13949Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21345Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10146000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g423Caenorhabditis elegansFrom_analysisWormBase-Compara
chrI_pilon.g425Caenorhabditis elegansFrom_analysisWormBase-Compara
chrI_pilon.g427Caenorhabditis elegansFrom_analysisWormBase-Compara
chrX_pilon.g18235Caenorhabditis elegansFrom_analysisWormBase-Compara
chrX_pilon.g18237Caenorhabditis elegansFrom_analysisWormBase-Compara
chrX_pilon.g18240Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00078765Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00243829Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00117534Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278208Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281303Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257804Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285010Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0010247Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-3955Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:270Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1340806Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:2053Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (4)
Structured_descriptionConcise_descriptionparp-1 (formerly known as pme-1) encodes a poly(ADP-ribose) polymerase (PARP) orthologous to human PARP1 (OMIM:173870); PARP-1 has two N-terminal zinc fingers that probably bind DNA, and a C-terminal catalytic domain; PARP-1 exhibits poly(ADP-ribose) activity in vitro, which is blocked by mammalian PARP inhibitors; since these inhibitors also cause embryonic lethality in worms exposed to ionizing radiation, PARP-1 is likely to be required in vivo for repairing broken DNA.Paper_evidenceWBPaper00005600
WBPaper00025222
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated14 Nov 2014 00:00:00
Automated_descriptionEnables NAD+ ADP-ribosyltransferase activity. Involved in determination of adult lifespan. Predicted to be located in nucleolus. Used to study type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; idiopathic pulmonary fibrosis; and perinatal necrotizing enterocolitis. Is an ortholog of human PARP1 (poly(ADP-ribose) polymerase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:9352Homo sapiensPaper_evidenceWBPaper00053647
Curator_confirmedWBPerson324
Date_last_updated04 Mar 2019 00:00:00
Potential_model (14)
Models_disease_assertedWBDOannot00000650
Molecular_infoCorresponding_CDSY71F9AL.18a
Y71F9AL.18b
Y71F9AL.18c
Y71F9AL.18d
Corresponding_transcriptY71F9AL.18a.1
Y71F9AL.18a.2
Y71F9AL.18b.1
Y71F9AL.18c.1
Y71F9AL.18d.1
Other_sequence (12)
Associated_featureWBsf976649
WBsf976650
WBsf983015
WBsf983016
WBsf1009424
WBsf219077
WBsf219078
Experimental_infoRNAi_result (11)
Expr_patternExpr2249
Expr1023238
Expr1031949
Expr1161576
Expr2014736
Expr2032970
Microarray_results (27)
Expression_cluster (142)
Interaction (59)
Map_infoMapIPosition-5.30235Error0.001434
PositivePositive_cloneY71F9ALInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4775
5051
Pseudo_map_position
Reference (24)
RemarkGene information and sequence connection from Serge Desnoyers. krb [020430]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene