WormBase Tree Display for Gene: WBGene00003992
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WBGene00003992 | SMap | S_parent | Sequence | ZK381 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pgl-1 | Person_evidence | WBPerson632 | |||||
Sequence_name | ZK381.4 | ||||||||
Molecular_name | ZK381.4a | ||||||||
ZK381.4a.1 | |||||||||
CE25689 | |||||||||
ZK381.4b | |||||||||
CE07628 | |||||||||
ZK381.4a.2 | |||||||||
ZK381.4b.1 | |||||||||
Other_name | CELE_ZK381.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | pgl-1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pgl | ||||||||
Allele (59) | |||||||||
Legacy_information | [C.elegansII] ct131 : germline P granules unstained by some(not all) monoclonal antibodies. 5% sterile, Mes if grown at 26C. Cloned: cosmid rescue (B0318). [SS] | ||||||||
P granules are not stained by K76 or OIC1D4, two anti-P-granule monoclonal antibodies. Mutants display sterility that is temperature-sensitive and has both a maternal and a nonmaternal component. | |||||||||
Strain (22) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (33) | |||||||||
Ortholog | WBGene00026560 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00163716 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00160178 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00130426 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00079876 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CBOVI.g9440 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g14159 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g4722 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP31.g25449 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g10356 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP32.g8088 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g13331 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP38.g326 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g1692 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g20218 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_I.g1410 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g15292 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00511.g12306 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_11647 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_000574 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_50294700 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIV_pilon.g10726 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (38) | |||||||||
Structured_description | Concise_description | pgl-1 encodes a predicted RNA-binding protein that contains a number of C-terminal RGG box motifs; PGL-1 activity is required at high temperatures during midlarval to adult stages for postembryonic germline development and hence fertility, and also for proper formation of the germline-specific P granules; PGL-1 protein, supplied maternally and embryonically, is a constitutive P granule component and thus, its localization is cytoplasmic in oocytes and early embryos, while perinuclear in the germline blastomere P4 and proliferating germ cells of larvae and adults; pgl-1 mRNA is expressed exclusively in hermaphrodite and male germlines and is detectable at all stages of development, with highest levels seen in adults; PGL-1 localization to P granules requires wild-type activity of the predicted germline helicase GLH-1. | Paper_evidence | WBPaper00003186 | |||||
WBPaper00004672 | |||||||||
WBPaper00004940 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 26 Aug 2004 00:00:00 | ||||||||
Automated_description | Enables RNA endonuclease activity; identical protein binding activity; and protein self-association. Involved in P granule organization and germ-line stem cell division. Located in P granule. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK381.4a | |||||||
ZK381.4b | |||||||||
Corresponding_CDS_history | ZK381.4:wp150 | ||||||||
Corresponding_transcript | ZK381.4a.1 | ||||||||
ZK381.4a.2 | |||||||||
ZK381.4b.1 | |||||||||
Other_sequence | CR03959 | ||||||||
CBC03903_1 | |||||||||
CRC01255_1 | |||||||||
CR03489 | |||||||||
JI171371.1 | |||||||||
Associated_feature | WBsf977133 | ||||||||
WBsf977134 | |||||||||
WBsf230205 | |||||||||
Experimental_info | RNAi_result | WBRNAi00113912 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021989 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059393 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069464 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007860 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027792 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084326 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084334 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084341 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00035758 | ||||||||
Construct_product (25) | |||||||||
Regulate_expr_cluster (19) | |||||||||
Antibody (25) | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (198) | |||||||||
Interaction (310) | |||||||||
Map_info | Map | IV | Position | 3.25355 | Error | 0.002367 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | nDf41 | |||||||
Positive_clone | B0318 | ||||||||
ZK381 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Negative | Negative_clone | C02F1 | |||||||
C25A8 | |||||||||
T22D1 | |||||||||
Mapping_data (2) | |||||||||
Reference (159) | |||||||||
Method | Gene |