WormBase Tree Display for Gene: WBGene00003926

WBGene00003926 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F25H2
  Identity: Version: 2
    Name: CGC_name: pas-5 Person_evidence: WBPerson1551
      Sequence_name: F25H2.9
      Molecular_name: F25H2.9
        F25H2.9.1
        CE09654
      Other_name: syt-2 Paper_evidence: WBPaper00032104
        CELE_F25H2.9 Accession_evidence: NDB BX284601
      Public_name: pas-5
    DB_info: Database: AceView gene 1L143
        WormQTL gene WBGene00003926
        WormFlux gene WBGene00003926
        NDB locus_tag CELE_F25H2.9
        Panther gene CAEEL|WormBase=WBGene00003926|UniProtKB=Q95008
          family PTHR11599
        NCBI gene 172942
        RefSeq protein NM_060364.7
        SwissProt UniProtAcc Q95008
        TREEFAM TREEFAM_ID TF106211
        UniProt_GCRP UniProtAcc Q95008
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 09 Jan 2009 11:41:23 WBPerson2970 Name_change: Other_name: syt-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pas
    Allele (12)
    Strain: WBStrain00036234
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00059894 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025342 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00092810 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00141381 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137495 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00209831 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00233930 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8880 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3619 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14103 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8356 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9637 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9647 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17609 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18956 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g21424 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15152 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00130.g5161 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pas-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold547.g3533 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00385.g10529 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05193 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002407 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02784 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g23679 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10213900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2077 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241235 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263913 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290145 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296446 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003485 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0016697 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040625-96 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9534 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1347009 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:61848 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (13)
    Structured_description: Concise_description: pas-5 encodes a proteasome alpha-type five subunit of the core 20S proteasome subcomplex; loss of pas-5 activity via RNAi results in a variety of defects including embryonic and larval lethality, sterility, and abnormal locomotion; loss of pas-5 activity also results in activation of SKN-1, a transcription factor required in adult worms for the acute response to oxidative stress and maternally for embryonic development. Paper_evidence: WBPaper00004402
            WBPaper00006395
            WBPaper00024497
            WBPaper00025054
            WBPaper00030965
          Curator_confirmed: WBPerson1843
          Date_last_updated: 18 Jan 2008 00:00:00
      Automated_description: Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Expressed in body wall musculature; germ line; gonad; hypodermis; and vulva. Is an ortholog of human PSMA5 (proteasome 20S subunit alpha 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F25H2.9
    Corresponding_transcript: F25H2.9.1
    Other_sequence (108)
    Associated_feature (7)
  Experimental_info: RNAi_result (36)
    Expr_pattern: Expr9677
      Expr1027785
      Expr1031859
      Expr1149459
      Expr2014744
      Expr2032978
    Drives_construct: WBCnstr00008738
      WBCnstr00014220
      WBCnstr00035792
    Construct_product: WBCnstr00035792
    Microarray_results (22)
    Expression_cluster (164)
    Interaction (154)
  Map_info: Map: I Position: 5.05517 Error: 0.00012
    Positive: Positive_clone: F25H2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (16)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene