WormBase Tree Display for Gene: WBGene00003728

WBGene00003728 SMap: S_parent: Sequence: C28D4
  Identity: Version: 2
    Name: CGC_name: nhr-138 Person_evidence: WBPerson600
      Sequence_name: C28D4.9
      Molecular_name: C28D4.9
        C28D4.9.1
        CE35413
      Other_name: CELE_C28D4.9 Accession_evidence: NDB BX284604
      Public_name: nhr-138
    DB_info: Database: AceView gene 4K495
        WormQTL gene WBGene00003728
        WormFlux gene WBGene00003728
        NDB locus_tag CELE_C28D4.9
        Panther gene CAEEL|WormBase=WBGene00003728|UniProtKB=Q95QT4
          family PTHR47630
        NCBI gene 3565904
        RefSeq protein NM_069329.9
        TREEFAM TREEFAM_ID TF315528
        TrEMBL UniProtAcc Q95QT4
        UniProt_GCRP UniProtAcc Q95QT4
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 02 Mar 2018 10:40:20 WBPerson4025 Event: Split_into: WBGene00303043
      Split_into: WBGene00303043
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (34)
    Strain: WBStrain00036714
    RNASeq_FPKM (74)
    GO_annotation: 00088597
      00088598
      00088599
      00088600
      00111709
      00111710
      00111711
      00111712
    Contained_in_operon: CEOP4336
    Ortholog: WBGene00035357 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00073824 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00076573 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00149390 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137511 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00159079 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7907 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g737 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g22091 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11862 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3933 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15709 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2396 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5816 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18423 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g23404 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15394 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00526.g11867 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g12910 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12362 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03038.g28859 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_05424.g34965 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_013244 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g7155 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g7156 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g7157 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40250410 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11390 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209316 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00214589 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (217)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C28D4.9
    Corresponding_CDS_history: C28D4.9:wp92
      C28D4.9:wp109
      C28D4.9a:wp264
      C28D4.9b:wp264
    Corresponding_transcript: C28D4.9.1
    Other_sequence: CJC07132_1
    Associated_feature: WBsf646249
      WBsf659800
      WBsf716577
      WBsf717174
      WBsf718161
      WBsf997466
      WBsf1017992
      WBsf228862
      WBsf228863
      WBsf228864
    Transcription_factor: WBTranscriptionFactor000367
  Experimental_info: RNAi_result: WBRNAi00041414 Inferred_automatically: RNAi_primary
      WBRNAi00011297 Inferred_automatically: RNAi_primary
      WBRNAi00076172 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025967
      Expr1031740
      Expr1145445
      Expr2014038
      Expr2032278
    Drives_construct: WBCnstr00035913
    Construct_product: WBCnstr00035913
    Microarray_results (17)
    Expression_cluster (81)
    Interaction: WBInteraction000526754
      WBInteraction000526817
      WBInteraction000526818
      WBInteraction000526819
      WBInteraction000530574
      WBInteraction000543711
  Map_info: Map: IV Position: 4.38835 Error: 0.000496
    Positive: Positive_clone: C28D4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00028802
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene