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WormBase Tree Display for Gene: WBGene00003151

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Name Class

WBGene00003151SMapS_parentSequenceW09C2
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classmca
Allele (95)
Legacy_information[Kraev A] Originally identified by similarity to mammalian PMCA family proteins in Genome Project data, mca-1 was expressed in insect cells and shown to have the predicted activity: aspartyl-phosphate formation in the presence of calcium, like mammalian counterparts, has a calmodulin-binding domain at the C-terminus and actually binds human calmodulin in a standard assay. Two other related sequences identified in the genomic sequencing data "in progress" and cDNAs finished by direct RT-PCR product sequencing. Mca-3 shows the highest sequence similarity to the mammalian analogues (77% on aminoacid). All three mca sequences have calmodulin-binding domains at the same location as their mammalian counterparts and the same predicted trans-membrane topology
StrainWBStrain00037024
RNASeq_FPKM (74)
GO_annotation (25)
OrthologWBGene00072230Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00026242Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00039147Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00041046Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00155883Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00154859Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00103851Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00137993Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00073443Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
CBOVI.g8591Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2391Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20031Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21172Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8084Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7949Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4138Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g995Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12461Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g19058Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g22065Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25356Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7839Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17517Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00256.g7982Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00256.g7983Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13101.g24076Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mca-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold521.g2843Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00616.g13601Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11889Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013478Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00929Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03226Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15951Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g6306Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40340310Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11367Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00255995Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000002974Saccharomyces cerevisiaeFrom_analysisInparanoid
OMA
OrthoInspector
Panther
SonicParanoid
FB:FBgn0259214Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
Paralog (14)
Structured_descriptionConcise_descriptionmca-1 encodes one of three C. elegans plasma membrane Ca2+ ATPases (PMCAs); by homology, MCA-1 is predicted to function as a molecular pump that couples ATP hydrolysis to extrusion of cytosolic Ca2+; when expressed in insect cells, MCA-1 exhibits calcium-pumping ATPase activity and binding to human calmodulin; large-scale RNAi screens indicate that mca-1 activity is required for normal coordinated locomotion and rates of growth; an mca-1::gfp reporter fusion is expressed solely in the excretory canal.Paper_evidenceWBPaper00003407
WBPaper00029172
Curator_confirmedWBPerson1843
Date_last_updated30 Apr 2007 00:00:00
Automated_descriptionEnables P-type calcium transporter activity and calmodulin binding activity. Involved in calcium ion transport and intracellular calcium ion homeostasis. Located in membrane. Expressed in excretory canal.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW09C2.3a
W09C2.3b
W09C2.3c
W09C2.3d
Corresponding_CDS_historyW09C2.3:wp92
Corresponding_transcriptW09C2.3a.1
W09C2.3b.1
W09C2.3c.1
W09C2.3d.1
Other_sequence (51)
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00088616Inferred_automaticallyRNAi_primary
WBRNAi00026522Inferred_automaticallyRNAi_primary
WBRNAi00019742Inferred_automaticallyRNAi_primary
WBRNAi00000551Inferred_automaticallyRNAi_primary
WBRNAi00088723Inferred_automaticallyRNAi_primary
WBRNAi00055018Inferred_automaticallyRNAi_primary
WBRNAi00027503Inferred_automaticallyRNAi_primary
WBRNAi00026523Inferred_automaticallyRNAi_primary
Expr_patternExpr8318
Expr1025870
Expr1031487
Expr1158554
Expr2013442
Expr2031676
Drives_constructWBCnstr00008393
WBCnstr00013258
WBCnstr00036215
Construct_productWBCnstr00036215
Microarray_results (38)
Expression_cluster (173)
Interaction (72)
Map_infoMapIVPosition4.34306Error0.000339
PositivePositive_cloneW09C2Author_evidenceKraev A
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00003407
WBPaper00011802
WBPaper00015567
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene