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WormBase Tree Display for Gene: WBGene00001955

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Name Class

WBGene00001955EvidenceCGC_data_submission
SMapS_parentSequenceF58A4
IdentityVersion1
NameCGC_namehlh-11Person_evidenceWBPerson346
Sequence_nameF58A4.7
Molecular_name (14)
Other_nameCELE_F58A4.7Accession_evidenceNDBBX284603
Public_namehlh-11
DB_infoDatabaseAceViewgene3K715
WormQTLgeneWBGene00001955
WormFluxgeneWBGene00001955
NDBlocus_tagCELE_F58A4.7
PanthergeneCAEEL|WormBase=WBGene00001955|UniProtKB=P34474
familyPTHR15741
NCBIgene176360
RefSeqproteinNM_001379865.2
NM_066728.8
NM_066729.10
SwissProtUniProtAccP34474
TREEFAMTREEFAM_IDTF316489
UniProt_GCRPUniProtAccP34474
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhlh
Allele (90)
StrainWBStrain00032859
WBStrain00030583
RNASeq_FPKM (74)
GO_annotation (8)
OrthologWBGene00055058Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00031518Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00160959Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00128224Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g5783Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4205Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8149Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14052Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3232Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g5165Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12881Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7243Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g8518Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3409Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_03093.g17788Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-hlh-11Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18343Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00091.g3993Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21738Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009478Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30196500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8667Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00276355Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261255Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0001994Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
ZFIN:ZDB-GENE-090810-1Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:11745Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:103239Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
RGD:1308357Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
ParalogWBGene00003510Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003378Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including excretory cell; intestinal cell; male-specific anatomical entity; non-striated muscle; and somatic nervous system. Is an ortholog of human TFAP4 (transcription factor AP-4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF58A4.7a
F58A4.7b
F58A4.7d
Corresponding_CDS_historyF58A4.7a:wp88
F58A4.7b:wp88
F58A4.7c:wp275
Corresponding_transcriptF58A4.7a.1
F58A4.7a.2
F58A4.7b.1
F58A4.7b.2
F58A4.7b.3
F58A4.7b.4
F58A4.7d.1
F58A4.7d.2
Other_sequence (26)
Associated_feature (16)
Transcription_factorWBTranscriptionFactor000068
Experimental_infoRNAi_resultWBRNAi00106987Inferred_automaticallyRNAi_primary
WBRNAi00048934Inferred_automaticallyRNAi_primary
WBRNAi00115659Inferred_automaticallyRNAi_primary
WBRNAi00033064Inferred_automaticallyRNAi_primary
WBRNAi00015934Inferred_automaticallyRNAi_primary
WBRNAi00005984Inferred_automaticallyRNAi_primary
WBRNAi00001428Inferred_automaticallyRNAi_primary
WBRNAi00087728Inferred_automaticallyRNAi_primary
Expr_patternExpr12824
Expr15663
Expr15976
Expr1012609
Expr1031137
Expr1152672
Expr1200145
Expr2012491
Expr2030730
Drives_constructWBCnstr00016793
WBCnstr00018615
WBCnstr00022887
WBCnstr00022888
WBCnstr00036563
WBCnstr00042427
Construct_productWBCnstr00016793
WBCnstr00016890
WBCnstr00017353
WBCnstr00022888
WBCnstr00036563
WBCnstr00042427
Regulate_expr_clusterWBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060683:hlh-11(overexpression)_downregulated
WBPaper00060683:hlh-11(overexpression)_upregulated
Microarray_results (40)
Expression_cluster (206)
Interaction (14)
Map_infoMapIIIPosition0.788189Error0.007563
PositivePositive_cloneF58A4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene