WormBase Tree Display for Gene: WBGene00001722
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| WBGene00001722 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F32D1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-13 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F32D1.4 | ||||||||
| Molecular_name | F32D1.4a | ||||||||
| F32D1.4a.1 | |||||||||
| CE34839 | |||||||||
| F32D1.4b | |||||||||
| CE51624 | |||||||||
| F32D1.4b.1 | |||||||||
| Other_name | CELE_F32D1.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-13 | ||||||||
| DB_info | Database | AceView | gene | 5E840 | |||||
| WormQTL | gene | WBGene00001722 | |||||||
| WormFlux | gene | WBGene00001722 | |||||||
| NDB | locus_tag | CELE_F32D1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001722|UniProtKB=O16295 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 185200 | |||||||
| RefSeq | protein | NM_001330858.4 | |||||||
| NM_071800.4 | |||||||||
| TrEMBL | UniProtAcc | A0A163VU65 | |||||||
| O16295 | |||||||||
| UniProt_GCRP | UniProtAcc | O16295 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00003413 | ||||||||
| WBStrain00033280 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00057893 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00041933 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00143704 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00127498 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| CBOVI.g564 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP28.g12091 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g19469 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g8777 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g15317 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g12365 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g10239 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g3674 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cni-grl-13 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold518.g2748 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_02754.g27807 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_20391 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| Sp34_50070220 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrV_pilon.g13981 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-13 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-13 is expressed in larval arcade cells; the Grl domainis predicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Enriched in AVA; I5 neuron; RIAL; RIAR; and dopaminergic neurons based on tiling array and single-cell RNA-seq studies. Is affected by several genes including clk-1; sek-1; and pgl-1 based on microarray and RNA-seq studies. Is affected by seven chemicals including methylmercuric chloride; Tunicamycin; and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32D1.4a | |||||||
| F32D1.4b | |||||||||
| Corresponding_CDS_history | F32D1.4:wp105 | ||||||||
| Corresponding_transcript | F32D1.4a.1 | ||||||||
| F32D1.4b.1 | |||||||||
| Associated_feature | WBsf652569 | ||||||||
| WBsf999774 | |||||||||
| WBsf999775 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014213 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046125 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4453 | ||||||||
| Expr5936 | |||||||||
| Expr1011259 | |||||||||
| Expr1150009 | |||||||||
| Expr2012247 | |||||||||
| Expr2030483 | |||||||||
| Drives_construct | WBCnstr00003880 | ||||||||
| WBCnstr00012018 | |||||||||
| WBCnstr00036738 | |||||||||
| Construct_product | WBCnstr00036738 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (53) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | V | Position | -5.80342 | Error | 0.019564 | |||
| Positive | Positive_clone | F32D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
