WormBase Tree Display for Gene: WBGene00001716

WBGene00001716 Evidence: Paper_evidence: WBPaper00003717
  SMap: S_parent: Sequence: T02E9
  Identity: Version: 1
    Name: CGC_name: grl-7 Person_evidence: WBPerson83
      Sequence_name: T02E9.2
      Molecular_name: T02E9.2a
        T02E9.2a.1
        CE13064
        T02E9.2b
        CE38539
        T02E9.2b.1
      Other_name: CELE_T02E9.2 Accession_evidence: NDB BX284605
      Public_name: grl-7
    DB_info: Database: WormQTL gene WBGene00001716
        WormFlux gene WBGene00001716
        NDB locus_tag CELE_T02E9.2
        Panther gene CAEEL|WormBase=WBGene00001716|UniProtKB=O18015
          family PTHR23261
        NCBI gene 179569
        RefSeq protein NM_001028923.7
            NM_001028922.4
        TREEFAM TREEFAM_ID TF316573
        TrEMBL UniProtAcc Q52GX6
            O18015
        UniProt_GCRP UniProtAcc O18015
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: grl
    Allele (31)
    Strain: WBStrain00032683
    RNASeq_FPKM (74)
    GO_annotation: 00031255
    Ortholog: WBGene00064723 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00041580 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00139719 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137435 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00192261 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00102390 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00107761 Pristionchus pacificus From_analysis: OMA
      WBGene00225757 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1365 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15681 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g9339 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g22105 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5441 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10367 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14371 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14574 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2178 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7984 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g10105 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00037.g2058 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-grl-7 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12622 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01406.g20726 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_24956 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016718 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05397 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g4404 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50319800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15751 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (32)
    Structured_description: Concise_description: grl-7 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-7 is expressed in intestine, hypodermis, and seamcells; the Grl domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins. Paper_evidence: WBPaper00003717
            WBPaper00006525
            WBPaper00026841
            WBPaper00027263
          Curator_confirmed: WBPerson567
          Date_last_updated: 05 Nov 2006 00:00:00
      Automated_description: Located in apical plasma membrane. Expressed in hypodermal cell and ventral cord blast cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T02E9.2a
      T02E9.2b
    Corresponding_transcript: T02E9.2a.1
      T02E9.2b.1
    Other_sequence: CRC02593_1
      CR11413
      PPC06936_1
      OOC00271_1
      CR01442
    Associated_feature: WBsf669378
      WBsf669379
      WBsf1001327
      WBsf1001328
      WBsf234526
  Experimental_info: RNAi_result: WBRNAi00018027 Inferred_automatically: RNAi_primary
      WBRNAi00035063 Inferred_automatically: RNAi_primary
      WBRNAi00052216 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4447
      Expr6573
      Expr15721
      Expr16250
      Expr1012644
      Expr1031027
      Expr1155848
      Expr2012272
      Expr2030508
    Drives_construct: WBCnstr00003902
      WBCnstr00012011
      WBCnstr00036744
      WBCnstr00042492
    Construct_product: WBCnstr00036744
      WBCnstr00042492
    Microarray_results (25)
    Expression_cluster (306)
    Interaction (202)
  Map_info (3)
  Reference: WBPaper00003717
    WBPaper00028754
    WBPaper00031588
    WBPaper00047478
    WBPaper00057376
    WBPaper00058700
    WBPaper00061320
    WBPaper00064105
  Remark: ground-like gene, contains ground-like domain, hedgehog-related Paper_evidence: WBPaper00003717
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene