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WormBase Tree Display for Gene: WBGene00001681

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Name Class

WBGene00001681SMapS_parentSequenceK02A4
IdentityVersion1
NameCGC_namegpc-1Person_evidenceWBPerson490
Sequence_nameK02A4.2
Molecular_nameK02A4.2
K02A4.2.1
CE03458
K02A4.2.2
K02A4.2.3
Other_nameCELE_K02A4.2Accession_evidenceNDBBX284606
Public_namegpc-1
DB_infoDatabaseAceViewgeneXN500
WormQTLgeneWBGene00001681
WormFluxgeneWBGene00001681
NDBlocus_tagCELE_K02A4.2
PanthergeneCAEEL|WormBase=WBGene00001681|UniProtKB=P54406
familyPTHR13809
NCBIgene181424
RefSeqproteinNM_001392864.1
SwissProtUniProtAccP54406
UniProt_GCRPUniProtAccP54406
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgpc
Allele (57)
StrainWBStrain00022692
WBStrain00028937
RNASeq_FPKM (74)
GO_annotation (13)
OrthologWBGene00051182Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00023553Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00089786Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00129480Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00225001Brugia malayiFrom_analysisWormBase-Compara
CSP21.g2360Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g9027Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13131Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP32.g10173Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20519Caenorhabditis quiockensisFrom_analysisWormBase-Compara
Cang_2012_03_13_00020.g1264Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-gpc-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
FL83_00007Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13849Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14729Oscheius tipulaeFrom_analysisWormBase-Compara
WBGene00239634Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258396Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0004921Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
FB:FBgn0263029Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
ZFIN:ZDB-GENE-010705-1Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
ZFIN:ZDB-GENE-030131-9966Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
ZFIN:ZDB-GENE-040426-2555Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
ZFIN:ZDB-GENE-040718-93Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
ZFIN:ZDB-GENE-050417-59Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
ZFIN:ZDB-GENE-050522-312Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
ZFIN:ZDB-GENE-091020-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
ZFIN:ZDB-GENE-121214-209Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
ZFIN:ZDB-GENE-091204-371Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
ZFIN:ZDB-GENE-091020-2Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
ZFIN:ZDB-GENE-030131-8332Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:4405Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:4407Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:4408Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:4410Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
HGNC:4402Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:4403Homo sapiensFrom_analysisInparanoid
OrthoFinder
Panther
HGNC:4404Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:19663Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
HGNC:19664Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:53439Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
MGI:1336169Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:1336171Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
SonicParanoid
MGI:102705Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:102704Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:102703Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:109164Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:95787Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:109163Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:3782541Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
MGI:3645690Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
SonicParanoid
RGD:61860Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620807Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
RGD:620805Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
RGD:620806Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
RGD:621514Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
RGD:621516Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
SonicParanoid
RGD:620808Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
RGD:1592634Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
Panther
SonicParanoid
RGD:11485321Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
RGD:11463329Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ParalogWBGene00001682Caenorhabditis elegansFrom_analysisTreeFam
Structured_description (2)
Molecular_infoCorresponding_CDSK02A4.2
Corresponding_transcriptK02A4.2.1
K02A4.2.2
K02A4.2.3
Other_sequence (11)
Associated_featureWBsf718735
WBsf1007456
WBsf1007457
WBsf1024142
WBsf1024143
Experimental_infoRNAi_resultWBRNAi00033844Inferred_automaticallyRNAi_primary
WBRNAi00049655Inferred_automaticallyRNAi_primary
WBRNAi00004987Inferred_automaticallyRNAi_primary
WBRNAi00078844Inferred_automaticallyRNAi_primary
WBRNAi00078842Inferred_automaticallyRNAi_primary
WBRNAi00016425Inferred_automaticallyRNAi_primary
Expr_patternChronogram1810
Expr1829
Expr6304
Expr8523
Expr8524
Expr15376
Expr1021863
Expr1153381
Expr2012201
Expr2030437
Drives_construct (11)
Construct_productWBCnstr00000548
WBCnstr00000549
WBCnstr00000550
WBCnstr00000551
WBCnstr00001697
WBCnstr00013345
WBCnstr00036775
Microarray_results (29)
Expression_cluster (165)
Interaction (30)
Anatomy_functionWBbtf0001
WBbtf1022
Map_infoMapXPosition8.81848Error0.13549
PositivePositive_cloneK02A4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5508
4215
4883
Pseudo_map_position
Reference (42)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene