WormBase Tree Display for Gene: WBGene00001680
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WBGene00001680 | SMap | S_parent | Sequence | F52A8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | gpb-2 | Person_evidence | WBPerson625 | |||||
Sequence_name | F52A8.2 | ||||||||
Molecular_name | F52A8.2a | ||||||||
F52A8.2a.1 | |||||||||
CE50400 | |||||||||
F52A8.2b | |||||||||
Other_name | eat-11 | ||||||||
gbp-2 | Paper_evidence | WBPaper00033094 | |||||||
CELE_F52A8.2 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | gpb-2 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 15 Dec 2010 15:28:40 | WBPerson2970 | Event | Acquires_merge | WBGene00001524 | ||||
Name_change | Other_name | gbp-2 | |||||||
Acquires_merge | WBGene00001524 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gpb | ||||||||
Allele (47) | |||||||||
Legacy_information | [Leon Avery] Weak Eat: slippery corpus. Slightly long. Movement slightly loopy (i.e. bends are deeper than normal). Hypersensitive to arecoline: will not grown at concentrations >= 1 mM. | ||||||||
See also ad541 | |||||||||
[C.elegansII] ad541 : weak Eat: slippery corpus. Slightly long. Movement slightly loopy (i.e. bends are deeper than normal). Hypersensitive to arecoline (cholinergic agonist): will not grown at concentrations >= 1 mM. Synthetic lethal with eat-6; suppressed by egl-30(gf), exp-2(gf). NA1. [Avery 1993; DA; JT] | |||||||||
[M Robatzek] eat-11 is allelic to gpb-2 (Robatzek et al. Current Biology 2001, 11:288-293) | |||||||||
Strain | WBStrain00028988 | ||||||||
WBStrain00029004 | |||||||||
WBStrain00022804 | |||||||||
WBStrain00028986 | |||||||||
WBStrain00037676 | |||||||||
WBStrain00005480 | |||||||||
WBStrain00005517 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (20) | |||||||||
Ortholog | WBGene00067672 | Caenorhabditis remanei | From_analysis (4) | ||||||
WBGene00032939 | Caenorhabditis briggsae | From_analysis (4) | |||||||
WBGene00158878 | Caenorhabditis brenneri | From_analysis (4) | |||||||
WBGene00153438 | Caenorhabditis brenneri | From_analysis (4) | |||||||
WBGene00100651 | Pristionchus pacificus | From_analysis (3) | |||||||
WBGene00218149 | Caenorhabditis japonica | From_analysis (2) | |||||||
WBGene00128553 | Caenorhabditis japonica | From_analysis (2) | |||||||
WBGene00033109 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
WBGene00224500 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g9256 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g4576 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g16738 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g8592 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g10802 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g22261 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g9867 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g10636 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g4898 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g16769 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_01288.g16172 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-gpb-2 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold630.g17292 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00506.g12235 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
GCK72_000141 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g10648 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g4107 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_10089600 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrI_pilon.g1368 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00243597 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00243598 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00262876 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00292982 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
SGD:S000005738 | Saccharomyces cerevisiae | From_analysis (8) | |||||||
FB:FBgn0030011 | Drosophila melanogaster | From_analysis (9) | |||||||
ZFIN:ZDB-GENE-040426-1712 | Danio rerio | From_analysis (9) | |||||||
ZFIN:ZDB-GENE-070112-342 | Danio rerio | From_analysis (9) | |||||||
HGNC:4401 | Homo sapiens | From_analysis (9) | |||||||
MGI:101848 | Mus musculus | From_analysis (9) | |||||||
RGD:620759 | Rattus norvegicus | From_analysis (9) | |||||||
Paralog | WBGene00001679 | Caenorhabditis elegans | From_analysis (2) | ||||||
Structured_description | Concise_description | gpb-2 encodes an ortholog of Gbeta(5), that is dispensable for viability, but required for normal egg-laying, locomotion, and pharyngeal pumping; GBP-2 may regulate the interaction between the GOA-1 and EGL-30 signaling pathways based on genetic analysis; gpb-2 is expressed throughout development in the nervous system and in muscle, and expression is dependent upon expression of both EAT-16 and EGL-10. | Paper_evidence | WBPaper00002466 | |||||
WBPaper00004406 | |||||||||
WBPaper00004687 | |||||||||
WBPaper00004713 | |||||||||
WBPaper00004714 | |||||||||
WBPaper00014715 | |||||||||
WBPaper00015075 | |||||||||
WBPaper00015719 | |||||||||
WBPaper00016788 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable signaling receptor complex adaptor activity. Involved in several processes, including cellular response to organonitrogen compound; regulation of egg-laying behavior; and regulation of pharyngeal pumping. Located in neuronal cell body. Expressed in body wall musculature; neurons; pharyngeal muscle cell; and vulval muscle. Human ortholog(s) of this gene implicated in intellectual developmental disorder with cardiac arrhythmia. Is an ortholog of human GNB5 (G protein subunit beta 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0081008 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4401) | ||||
Molecular_info | Corresponding_CDS | F52A8.2a | |||||||
Corresponding_CDS_history | F52A8.2:wp246 | ||||||||
Corresponding_transcript | F52A8.2b | ||||||||
F52A8.2a.1 | |||||||||
Other_sequence (82) | |||||||||
Associated_feature | WBsf984145 | ||||||||
WBsf984146 | |||||||||
WBsf1010061 | |||||||||
WBsf1010062 | |||||||||
WBsf219742 | |||||||||
WBsf219743 | |||||||||
WBsf219744 | |||||||||
Experimental_info | RNAi_result | WBRNAi00047906 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089830 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032572 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116830 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063514 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090194 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089876 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090035 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1344 | ||||||||
Expr1360 | |||||||||
Expr1020669 | |||||||||
Expr1031001 | |||||||||
Expr1151735 | |||||||||
Expr2012200 | |||||||||
Expr2030436 | |||||||||
Drives_construct | WBCnstr00000572 | ||||||||
WBCnstr00001696 | |||||||||
WBCnstr00001704 | |||||||||
WBCnstr00022812 | |||||||||
WBCnstr00036776 | |||||||||
Construct_product | WBCnstr00001696 | ||||||||
WBCnstr00036776 | |||||||||
Antibody | WBAntibody00000370 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (149) | |||||||||
Interaction (64) | |||||||||
Map_info | Map | I | Position | 1.91015 | Error | 0.005018 | |||
Well_ordered | |||||||||
Positive | Positive_clone | F52A8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
R02H7 | |||||||||
Negative | Negative_clone | F07A5 | |||||||
Mapping_data | 2_point | 6193 | |||||||
Multi_point | 2456 | ||||||||
2457 | |||||||||
2458 | |||||||||
2459 | |||||||||
2460 | |||||||||
3034 | |||||||||
3946 | |||||||||
3947 | |||||||||
4489 | |||||||||
4710 | |||||||||
Pos_neg_data | 7086 | ||||||||
7087 | |||||||||
7088 | |||||||||
Reference (70) | |||||||||
Remark | Interacting_genes '[Leon Avery] eat-6: Lethal or subviable in double mutants with eat-6. | ||||||||
Interacting_genes '[Leon Avery] egl-30: Suppressed by egl-30(gf) mutations. | |||||||||
Method | Gene |