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WormBase Tree Display for Gene: WBGene00001127

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Name Class

WBGene00001127SMapS_parentSequenceCHROMOSOME_X
IdentityVersion3
NameCGC_namedyf-11Person_evidenceWBPerson252
WBPerson41163
Sequence_nameC02H7.1
Molecular_nameC02H7.1
C02H7.1.1
CE06757
Other_nameift-54Person_evidenceWBPerson41163
CELE_C02H7.1Accession_evidenceNDBBX284606
Public_namedyf-11
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:23WBPerson1971EventImportedInitial conversion from geneace
228 Nov 2007 17:00:11WBPerson2970EventAcquires_mergeWBGene00015363
Name_changeSequence_nameC02H7.1
305 May 2023 12:43:53WBPerson51134Name_changeCGC_namedyf-11
Other_nameift-54
Acquires_mergeWBGene00015363
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdyf
Allele (54)
Legacy_information[Herman RK] Defective in dye (FITC or DiO) filling of amphid and phasmid neurons. Animals slightly short. Chemotaxis defective. ME3.
[C.elegansII] mn392 : defective in dye (FITC or DiO) filling of amphid and phasmid neurons. Animals slightly short. Chemotaxis defective. ME3. NA1. [Starich et al. 1995]
Complementation_data[Herman RK] dyf-11(mn392) complements che-2(e1033), che-2(mn395) and daf-3(e1376) with respect to dye filling.
StrainWBStrain00002488
WBStrain00022695
WBStrain00034382
WBStrain00036634
WBStrain00037125
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00040695Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00060239Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00138803Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00112869Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00130525Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222186Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3884Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13777Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21290Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g857Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13405Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20753Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8941Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16586Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18674Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9811Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g105Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g4246Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00309.g8972Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dyf-11Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15635Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00662.g14159Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00693.g14473Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03209Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_022197Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12808Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3517Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0017500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18321Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241415Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00299756Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0038221Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-1146Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:17861Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1921269Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1309252Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
Structured_descriptionConcise_descriptiondyf-11 encodes a conserved protein that is orthologous to mammalian IFT54 (MIP-T3, Traf3ip1) and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport complex B (IFT-B) proteins; DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis; DYF-11 physically interacts with DYF-19, the C. elegans FBF1 (Fas(TNFRSF6)-binding factor 1) ortholog that localizes to ciliary transition fibers; a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons; a DYF-11::GFP protein fusion is detected throughout the cilium and localizes to IFT-B subcomplexes in a manner consistent with an early role in IFT-B subcomplex assembly; dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor.Paper_evidenceWBPaper00002087
WBPaper00003954
WBPaper00029131
WBPaper00031375
WBPaper00031483
WBPaper00044470
Curator_confirmedWBPerson1843
Date_last_updated05 Dec 2013 00:00:00
Automated_descriptionPredicted to enable microtubule binding activity. Involved in several processes, including cilium organization; dauer entry; and hyperosmotic response. Located in axoneme and ciliary basal body. Part of intraciliary transport particle B. Expressed in ciliated neurons and sensory neurons. Human ortholog(s) of this gene implicated in Senior-Loken syndrome. Is an ortholog of human TRAF3IP1 (TRAF3 interacting protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050576Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17861)
Molecular_infoCorresponding_CDSC02H7.1
Corresponding_transcriptC02H7.1.1
Other_sequenceASC30593_1
JI180288.1
FE917477.1
Associated_feature (5)
Experimental_infoRNAi_resultWBRNAi00028367Inferred_automaticallyRNAi_primary
WBRNAi00039465Inferred_automaticallyRNAi_primary
Expr_pattern (15)
Drives_constructWBCnstr00003078
WBCnstr00004533
WBCnstr00006568
WBCnstr00011192
WBCnstr00012140
WBCnstr00013099
WBCnstr00013128
WBCnstr00013161
WBCnstr00013206
Construct_productWBCnstr00006568
WBCnstr00011192
WBCnstr00013099
WBCnstr00013128
WBCnstr00013206
Microarray_results (20)
Expression_cluster (153)
Interaction (30)
Map_infoMapXPosition-19.5014Error0.001047
PositivePositive_cloneC02H7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point3080
3081
3082
3083
Reference (33)
MethodGene