WormBase Tree Display for Gene: WBGene00000888

WBGene00000888 SMap: S_parent: Sequence: C34D4
  Identity: Version: 2
    Name: CGC_name: cyn-12 Person_evidence: WBPerson466
      Sequence_name: C34D4.12
      Molecular_name: C34D4.12a
        C34D4.12a.1
        CE17506
        C34D4.12b
        CE49222
        C34D4.12b.1
      Other_name: cyp-12 Person_evidence: WBPerson466
        CELE_C34D4.12 Accession_evidence: NDB BX284604
      Public_name: cyn-12
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 20 Sep 2004 16:20:03 WBPerson1971 Name_change: CGC_name: cyp-12 -> cyn-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cyn
    Allele (15)
    Legacy_information: [Page AP] C34D4.12. No mutants known. Transpliced to SL1 and SL2
    RNASeq_FPKM (74)
    GO_annotation (10)
    Ortholog: WBGene00076725 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028164 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00132156 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00191935 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00218346 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00071218 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00214851 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222833 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10729 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4333 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15478 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2228 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g19782 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3202 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3487 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1045 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6286 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18718 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00238.g7635 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cyn-12 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21106 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02023.g24432 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06555 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013852 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03136 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20670 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40290800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10764 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240760 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304980 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261178 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286137 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0035141 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-051009-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9260 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1916066 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309119 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (18)
    Structured_description: Concise_description: cyn-12 encodes a member of the cyclophilin family that is related to human PPIL1 (CGI-124); based upon its sequence similarity, CYN-12 is predicted to be a cytoplasmic protein potentially involved in a wide range of signal transduction pathways. Paper_evidence: WBPaper00026884
          Curator_confirmed: WBPerson48
            WBPerson1843
          Date_last_updated: 20 Mar 2007 00:00:00
      Automated_description: Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 14. Is an ortholog of human PPIL1 (peptidylprolyl isomerase like 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0112325 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9260)
  Molecular_info: Corresponding_CDS: C34D4.12a
      C34D4.12b
    Corresponding_transcript: C34D4.12a.1
      C34D4.12b.1
    Other_sequence (54)
    Associated_feature: WBsf651890
      WBsf230223
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1011395
      Expr1030553
      Expr1145887
      Expr2010664
      Expr2028904
    Drives_construct: WBCnstr00037218
    Construct_product: WBCnstr00037218
    Microarray_results (19)
    Expression_cluster (110)
    Interaction (56)
  Map_info: Map: IV Position: 3.29058 Error: 8.3e-05
    Positive: Positive_clone: C34D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026884
    WBPaper00038491
    WBPaper00055090
  Remark: This gene has been renamed with approval of the CGC (cyp-12->cyn-12) Person_evidence: WBPerson466
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene