Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000796

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000796EvidencePaper_evidenceWBPaper00005857
SMapS_parentSequenceC14A4
IdentityVersion2
NameCGC_namecrn-3Person_evidenceWBPerson1606
Sequence_nameC14A4.4
Molecular_nameC14A4.4a
C14A4.4a.1
CE02145
C14A4.4b
CE51406
C14A4.4b.1
Other_nameexos-10Person_evidenceWBPerson699
WBPerson6229
CELE_C14A4.4Accession_evidenceNDBBX284602
Public_namecrn-3
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
204 Jun 2007 15:54:19WBPerson2970Name_changeOther_nameexos-10
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcrn
Allele (78)
StrainWBStrain00036816
WBStrain00007421
RNASeq_FPKM (74)
GO_annotation (37)
Contained_in_operonCEOP2496
OrthologWBGene00072336Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00026000Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00156363Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122969Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00053414Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00222444Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12398Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12400Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19161Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12274Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9182Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16526Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16808Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14529Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10076Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17339Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g17341Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00618.g12840Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g5697Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8942Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00248.g7917Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21952Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005496Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_016229Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02135Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8116Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20291510Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5769Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00081232Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00247234Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00110596Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262221Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00293852Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005527Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0038269Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-781Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9138Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1355322Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1593248Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00013256Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015680Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncrn-3 encodes a cell death-related nuclease, homologous to the 100 kDa polymyositis/scleroderma autoantigen (PM/Scl-100), that is required for normal levels of DNA degradation during apoptosis; PM/Scl-100 is a ribonuclease component of the multiexonuclease exosome complex, which processes or degrades several types of RNAs in yeast; crn-3(RNAi) animals show retarded growth and a low penetrance of embryonic lethality; CRN-3 promotes both DNA degradation and cell corpse engulfment, in a partially redundant pathway that includes CRN-2 but is parallel to CPS-6; CRN-3 is predicted to be mitochondrial.Paper_evidenceWBPaper00004424
WBPaper00005857
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable 3'-5'-RNA exonuclease activity and single-stranded RNA binding activity. Involved in apoptotic DNA fragmentation and apoptotic cell clearance. Predicted to be located in nucleolus. Predicted to be part of nuclear exosome (RNase complex). Is an ortholog of human EXOSC10 (exosome component 10).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC14A4.4a
C14A4.4b
Corresponding_CDS_historyC14A4.4b:wp252
Corresponding_transcriptC14A4.4a.1
C14A4.4b.1
Other_sequence (17)
Associated_featureWBsf658150
WBsf222034
Experimental_infoRNAi_result (11)
Expr_patternExpr16396
Expr1026985
Expr1030495
Expr1144539
Expr2010538
Expr2028778
Drives_construct (2)
Construct_productWBCnstr00037270
WBCnstr00042997
Microarray_results (29)
Expression_cluster (121)
SAGE_tag (15)
Interaction (224)
WBProcessWBbiopr:00000014
WBbiopr:00000103
Map_infoMapIIPosition3.11949Error0.000279
PositivePositive_cloneC14A4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005857
WBPaper00006283
WBPaper00019408
WBPaper00027291
WBPaper00038491
WBPaper00048226
WBPaper00055090
WBPaper00057242
WBPaper00065012
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene