Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000497

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000497SMapS_parentSequenceF48A11
IdentityVersion3
NameCGC_namechs-2Person_evidenceWBPerson50
Sequence_nameF48A11.1
Molecular_nameF48A11.1a
F48A11.1a.1
CE39155
F48A11.1b
CE50690
F48A11.1c
CE50769
F48A11.1b.1
F48A11.1c.1
Other_namechs-1
chi-2CGC_data_submission
CELE_F48A11.1Accession_evidenceNDBBX284602
Public_namechs-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
205 Jul 2004 10:24:20WBPerson1971Name_changeCGC_namechs-2
330 Apr 2015 13:34:49WBPerson1983EventAcquires_mergeWBGene00018583
Acquires_mergeWBGene00018583
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classchs
Allele (220)
RNASeq_FPKM (74)
GO_annotation (17)
OrthologWBGene00029146Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149707Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122708Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00072400Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00076879Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00071998Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00151305Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00218048Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00229998Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6971Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1331Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17294Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18352Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1670Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25655Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g863Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7344Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23546Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g2704Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28901Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22524Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00001.g30Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10080.g22445Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-chs-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold605.g5595Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00305.g9077Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05860Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05862Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_007820Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08658Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4066Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20003200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g3065Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00214065Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00076032Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00247936Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277870Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00265918Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287435Trichuris murisFrom_analysisWormBase-Compara
WBGene00302807Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000227Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
FB:FBgn0029091Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
FB:FBgn0001311Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-1188Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
SonicParanoid
ZFIN:ZDB-GENE-060503-308Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-060503-320Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ZFIN:ZDB-GENE-060503-226Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ParalogWBGene00000496Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionchs-2 encodes a putative chitin synthase, paralogous to CHS-1; CHS-2 isrequired for synthesis of chitin lining the inner pharyngeal surface(primarily in the buccal cavity and grinder), while CHS-1 is dispensablefor pharyngeal chitin; CHS-2 is also required for normal pharyngealshape and function, and for larval viability; chs-2(RNAi) animals haveabnormally large, misshapen grinders, and arrest as early larvae; chs-2is expressed by the glandular pharyngeal g1 and g2 cells, and by m3 andm4 myoepithelial cells; chs-2 is transcribed in short periods beforeeach larval molt; the pharyngeal expression of chs-2 parallels gna-1;CHS-2 is predicted to be in the plasma membrane rather than the Golgiapparatus.Paper_evidenceWBPaper00004881
WBPaper00006390
WBPaper00012846
WBPaper00026721
WBPaper00028588
WBPaper00029233
Curator_confirmedWBPerson567
Date_last_updated07 Apr 2007 00:00:00
Automated_descriptionPredicted to enable chitin synthase activity. Involved in chitin biosynthetic process and positive regulation of nematode larval development. Predicted to be located in cell periphery and cell septum. Expressed in pharynx.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF48A11.1a
F48A11.1b
F48A11.1c
Corresponding_CDS_historyF48A11.1:wp149
Corresponding_transcriptF48A11.1a.1
F48A11.1b.1
F48A11.1c.1
Other_sequence (17)
Associated_feature (17)
Experimental_info (6)
Map_infoMapIIPosition-15.8229Error0.018071
PositivePositive_cloneF48A11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkGene was renamed from chi-2 to chs-2 at request of CGC, note that the other name 'chs-1' is from the Brugia malayi ortholog...this ortholog may be renamed in the future to clarify the situation.CGC_data_submission
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene