WormBase Tree Display for Gene: WBGene00000461
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WBGene00000461 | SMap | S_parent | Sequence | F17A2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ceh-40 | Person_evidence | WBPerson83 | |||||
Sequence_name | F17A2.5 | ||||||||
Molecular_name | F17A2.5 | ||||||||
F17A2.5.1 | |||||||||
CE03215 | |||||||||
Other_name | CELE_F17A2.5 | Accession_evidence | NDB | BX284606 | |||||
Public_name | ceh-40 | ||||||||
DB_info | Database | AceView | gene | XM934 | |||||
WormQTL | gene | WBGene00000461 | |||||||
WormFlux | gene | WBGene00000461 | |||||||
NDB | locus_tag | CELE_F17A2.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000461|UniProtKB=Q19503 | |||||||
family | PTHR11850 | ||||||||
NCBI | gene | 191624 | |||||||
RefSeq | protein | NM_077659.4 | |||||||
SwissProt | UniProtAcc | Q19503 | |||||||
TREEFAM | TREEFAM_ID | TF314340 | |||||||
UniProt_GCRP | UniProtAcc | Q19503 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ceh | ||||||||
Allele (46) | |||||||||
Legacy_information | [Burglin,03/98] homeobox gene | ||||||||
Strain (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog | WBGene00058736 | Caenorhabditis remanei | From_analysis (4) | ||||||
WBGene00027778 | Caenorhabditis briggsae | From_analysis (3) | |||||||
WBGene00122670 | Caenorhabditis japonica | From_analysis (3) | |||||||
WBGene00190637 | Caenorhabditis brenneri | From_analysis (2) | |||||||
CSP21.g12107 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g1060 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g17974 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g3827 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g4798 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP40.g6955 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_X.g25674 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_05351.g34838 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_01905 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_025423 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_X0153200 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g20233 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
ZFIN:ZDB-GENE-000405-5 | Danio rerio | From_analysis (3) | |||||||
ZFIN:ZDB-GENE-031218-1 | Danio rerio | From_analysis (3) | |||||||
MGI:1341793 | Mus musculus | From_analysis (3) | |||||||
Paralog | WBGene00000443 | Caenorhabditis elegans | From_analysis (2) | ||||||
WBGene00006796 | Caenorhabditis elegans | From_analysis (2) | |||||||
WBGene00017690 | Caenorhabditis elegans | From_analysis (3) | |||||||
Structured_description | Concise_description | ceh-40 encodes one of three C. elegans homeodomain proteins (CEH-20, CEH-40, and CEH-60) homologous to Extradenticle (Exd/Pbx); ceh-40 genetically interacts with ceh-20 and unc-62 during embryonic development: while loss of ceh-40 activity alone results in no significant embryonic lethality, loss of ceh-40 and ceh-20, or ceh-40, ceh-20, and unc-62, results in incompletely penetrant embryonic lethality. | Paper_evidence | WBPaper00005629 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson480 | |||||||||
Date_last_updated | 27 Jun 2011 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dopaminergic neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F17A2.5 | |||||||
Corresponding_transcript | F17A2.5.1 | ||||||||
Other_sequence | RSC01549_1 | ||||||||
RS05971 | |||||||||
CRC11909_1 | |||||||||
Associated_feature | WBsf654475 | ||||||||
WBsf978385 | |||||||||
WBsf1007276 | |||||||||
WBsf1024032 | |||||||||
Transcription_factor | WBTranscriptionFactor000510 | ||||||||
Experimental_info | RNAi_result (25) | ||||||||
Expr_pattern (14) | |||||||||
Drives_construct | WBCnstr00002363 | ||||||||
WBCnstr00002683 | |||||||||
WBCnstr00037519 | |||||||||
WBCnstr00042432 | |||||||||
WBCnstr00042463 | |||||||||
Construct_product | WBCnstr00016535 | ||||||||
WBCnstr00016723 | |||||||||
WBCnstr00037519 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (147) | |||||||||
Interaction (286) | |||||||||
Map_info | Map | X | Position | 7.02147 | Error | 0.003548 | |||
Positive | Positive_clone | F17A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
W06D11 | |||||||||
Mapping_data | Multi_point | 4173 | |||||||
4210 | |||||||||
4765 | |||||||||
Pseudo_map_position | |||||||||
Reference (22) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |