WormBase Tree Display for Gene: WBGene00000419

WBGene00000419 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 1
    Name: CGC_name: ced-5 Person_evidence: WBPerson261
      Sequence_name: C02F4.1
      Molecular_name: C02F4.1
        C02F4.1.1
        CE24779
      Other_name: CELE_C02F4.1 Accession_evidence: NDB BX284604
      Public_name: ced-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ced
    Allele (106)
    Legacy_information: [C.elegansII] n1812 : programmmed cell deaths abnormal, dying cells arrest at highly refractile stage; killer cells fail to engulf target cells; engulfment group B (ced-2,5,10 : suppress vulvaless phenotype of lin-24, lin-33); Mig, hermaphrodite distal tip cells execute extra turns; extensive maternal rescue; no gross phenotype. OA1: n2002.Cloned : 5.6 kb transcript, predicted protein 180 kD, novel.[Ellis et al. 1991; MT; NF; ZB]
      [C.elegansII] n1812 : programmmed cell deaths abnormal, dying cells arrest at highly refractile stage; killer cells fail to engulf target cells; engulfment group B (ced-2,5,10 : suppress vulvaless phenotype of lin-24, lin-33); Mig, hermaphrodite distal tip cells execute extra turns; extensive maternal rescue; no gross phenotype. OA1: n2002.Cloned : 5.6 kb transcript, predicted protein 180 kD, novel. [Ellis et al. 1991; MT; NF; ZB]
      [Wu Y-C, Horvitz HR] Encodes 1781 aa predicted protein with similarity to human protein DOCK180. n1812 is stop at codon 28, n2002, n2691 also nonsense mutations, m2098, n2099 are splice acceptor mutations. n1812/sDf2 resemble n1812/n1812, probable null phenotype. Predicted gene C02F4.1
    Strain: WBStrain00027132
      WBStrain00027134
      WBStrain00027167
      WBStrain00027174
      WBStrain00027281
      WBStrain00027282
      WBStrain00027293
      WBStrain00027342
      WBStrain00031450
    RNASeq_FPKM (74)
    GO_annotation (48)
    Ortholog: WBGene00059181 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030152 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00139642 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00158152 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00127479 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00212097 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222177 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10907 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3492 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g3494 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4494 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21728 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7417 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5350 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g812 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g950 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19890 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14121 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00444.g10924 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00711.g13611 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ced-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15137 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9243 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00637.g13869 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18232 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_015006 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02933 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11664 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40076600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11609 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00074085 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00075058 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00241749 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00262118 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290613 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004414 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0015513 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0264324 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-120703-34 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-031125-1 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            PhylomeDB
      ZFIN:ZDB-GENE-080108-4 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-080108-5 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-060130-74 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-100624-1 Danio rerio From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      HGNC:2987 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:2988 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:2989 Homo sapiens From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      HGNC:19192 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      HGNC:23476 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2652871 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2149010 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2429763 Mus musculus From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      MGI:1918006 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            SonicParanoid
      MGI:2429765 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306872 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1566072 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306677 Rattus norvegicus From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      RGD:1564189 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            PhylomeDB
      RGD:1561724 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            SonicParanoid
    Paralog: WBGene00009065 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018520 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description (2)
  Disease_info: Potential_model: DOID:0111951 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2988)
      DOID:1094 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2989)
  Molecular_info: Corresponding_CDS: C02F4.1
    Corresponding_transcript: C02F4.1.1
    Other_sequence (13)
    Associated_feature: WBsf646307
      WBsf660584
      WBsf976954
      WBsf976955
      WBsf976956
      WBsf228996
      WBsf228997
      WBsf228998
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr8762
      Expr14253
      Expr1020545
      Expr1030235
      Expr1143552
      Expr2009849
      Expr2028089
    Drives_construct: WBCnstr00005770
      WBCnstr00037557
      WBCnstr00040684
    Construct_product: WBCnstr00014899
      WBCnstr00037557
    Microarray_results (24)
    Expression_cluster (132)
    Interaction (129)
    WBProcess: WBbiopr:00000013
      WBbiopr:00000014
      WBbiopr:00000015
      WBbiopr:00000023
      WBbiopr:00000107
  Map_info: Map: IV Position: 4.61067 Error: 0.002681
    Well_ordered
    Positive: Positive_clone: C02F4 Inferred_automatically: From sequence, transcript, pseudogene data
        ZK188
    Mapping_data: Multi_point: 1517
        1518
        1520
        1521
        1522
        1523
        1820
        1822
        4720
      Pos_neg_data: 4243
  Reference (191)
  Method: Gene