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WormBase Tree Display for Gene: WBGene00000409

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Name Class

WBGene00000409EvidencePaper_evidenceWBPaper00004192
SMapS_parentSequenceF39H11
IdentityVersion1
NameCGC_namecdk-8Person_evidenceWBPerson346
Sequence_nameF39H11.3
Molecular_name (3)
Other_nameCELE_F39H11.3Accession_evidenceNDBBX284601
Public_namecdk-8
DB_infoDatabase (14)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdk
Allele (46)
RNASeq_FPKM (74)
GO_annotation (22)
OrthologWBGene00060024Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033308Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00089734Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00142205Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00120161Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00224209Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9115Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9106Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g10166Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1772Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g707Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8222Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g985Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21172Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18235Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24264Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00186.g6509Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cdk-8Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20516Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20517Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00281.g8637Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05054Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00967Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00968Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9901Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10246400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1655Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239421Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00304836Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00304837Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257900Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286272Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005963Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0015618Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030903-2Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040724-19Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:1779Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:19338Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1925584Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1196224Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1305435Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
Paralog (17)
Structured_descriptionConcise_descriptioncdk-8 encodes a member of the cyclin-dependent serine/threonine protein kinase family orthologous to human CDK8 (OMIM:603184) which functions in transcriptional regulation with the positive regulatory factor cyclin C, is associated with the RNA polymerase II holoenzyme, and may regulate gene-specific activators; CDK-8 also contains a glutamine/asparagine-rich domain; loss of cdk-8 function via RNA-mediated interference (RNAi) results in sterility in the injected hermaphrodite, suggesting that in C. elegans, CDK-8 may play a role in germ-line development.Paper_evidence (11)
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable protein serine/threonine kinase activity. Predicted to be involved in G1/S transition of mitotic cell cycle. Predicted to be located in nucleus. Expressed in anchor cell and neurons. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 87 and dilated cardiomyopathy. Is an ortholog of human CDK19 (cyclin dependent kinase 19) and CDK8 (cyclin dependent kinase 8).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0112221Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:19338)
DOID:12930Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1779)
Molecular_infoCorresponding_CDSF39H11.3
Corresponding_CDS_historyF39H11.3:wp90
Corresponding_transcriptF39H11.3.1
Other_sequence (22)
Associated_featureWBsf643545
WBsf643546
WBsf984482
WBsf984483
WBsf1010264
WBsf218195
WBsf218196
Transcription_factorWBTranscriptionFactor000505
Experimental_infoRNAi_result (45)
Expr_patternExpr10769
Expr12673
Expr1017434
Expr1030226
Expr1150671
Expr2009814
Expr2028055
Drives_constructWBCnstr00017723
WBCnstr00022250
WBCnstr00037563
Construct_productWBCnstr00022249
WBCnstr00022251
WBCnstr00022252
WBCnstr00037563
Microarray_results (19)
Expression_cluster (104)
Interaction (99)
Map_infoMapIPosition3.02024Error0.003576
PositivePositive_cloneF39H11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4223
4728
Pseudo_map_position
Reference (32)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene