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WormBase Tree Display for Gene: WBGene00000371

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Name Class

WBGene00000371EvidencePaper_evidenceWBPaper00005707
SMapS_parentSequenceF26E4
IdentityVersion2
NameCGC_namecox-5BPerson_evidenceWBPerson117
WBPerson7169
Sequence_nameF26E4.9
Molecular_nameF26E4.9
F26E4.9.1
CE09693
F26E4.9.2
Other_namelpd-4CGC_data_submission
cco-1Person_evidenceWBPerson1157
CELE_F26E4.9Accession_evidenceNDBBX284601
Public_namecox-5B
DB_infoDatabase (10)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
205 Sep 2017 13:25:30WBPerson2970Name_changeCGC_namecox-5B
Other_namecco-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcox
Allele (21)
Component_of_genotypeWBGenotype00000141
RNASeq_FPKM (74)
GO_annotation00049238
00049239
00049240
00049241
00049242
00049243
00107246
00107247
00107248
Contained_in_operonCEOP1930
OrthologWBGene00026579Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00079900Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00094454Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00146490Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00124681Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00151480Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00223881Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9601Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6722Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3669Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7800Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13532Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19238Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7996Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13366Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5071Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g597Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00066.g3207Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cco-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15333Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01081.g18233Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17304Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000630Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05931Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18279Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10057000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1909Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237027Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00272484Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263064Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000003155Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
FB:FBgn0031830Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040625-180Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-060825-71Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-100525-2Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:2269Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:88475Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:620608Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
Structured_descriptionConcise_descriptioncox-5b encodes the ortholog of the nuclear-encoded cytochrome c oxidase-1 subunit Vb/COX4, a component of the electron transport chain in mitochondria; knock-down of cox-5b via RNA interference in specific tissues like body wall muscle decreases life span, whereas knock-down in the nervous system and intestine increases life-span; the effects of cox-5b on life span indicate that the electron transport chain functions in a tissue-specific manner to affect the aging process, and studies show that this effect is dependent on the mitochondrial unfolded protein response.Paper_evidenceWBPaper00037991
Curator_confirmedWBPerson324
Date_last_updated04 May 2011 00:00:00
Automated_descriptionPredicted to enable metal ion binding activity. Involved in determination of adult lifespan; lipid storage; and proton motive force-driven mitochondrial ATP synthesis. Predicted to be located in mitochondrial envelope. Predicted to be part of mitochondrial respiratory chain complex IV. Is an ortholog of human COX5B (cytochrome c oxidase subunit 5B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Modifies_diseaseDOID:450
Modifies_disease_in_annotationWBDOannot00001305
Molecular_infoCorresponding_CDSF26E4.9
Corresponding_transcriptF26E4.9.1
F26E4.9.2
Other_sequence (85)
Associated_featureWBsf643631
WBsf981084
WBsf984809
WBsf984810
WBsf218348
WBsf218349
WBsf218350
WBsf218351
WBsf218352
Experimental_infoRNAi_result (135)
Expr_patternExpr1011393
Expr1030199
Expr1149560
Expr2009764
Expr2028004
Drives_constructWBCnstr00037591
Construct_productWBCnstr00020784
WBCnstr00020785
WBCnstr00037591
Regulate_expr_cluster (15)
Microarray_results (26)
Expression_cluster (112)
Interaction (119)
WBProcessWBbiopr:00000001
WBbiopr:00000121
Map_infoMapIPosition3.90842Error0.000958
PositivePositive_cloneF26E4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (41)
RemarkThis gene was formerly known as lpd-4 and was renamed following advice from the CGC. [krb 030512]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene