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WormBase Tree Display for Gene: WBGene00000246

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Name Class

WBGene00000246EvidencePaper_evidenceWBPaper00005566
SMapS_parentSequenceM7
IdentityVersion1
NameCGC_namebcc-1Person_evidenceWBPerson320
Sequence_nameM7.3
Molecular_name (3)
Other_nameCELE_M7.3Accession_evidenceNDBBX284604
Public_namebcc-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbcc
Allele (68)
RNASeq_FPKM (74)
GO_annotation00072167
00072168
00072169
00107106
00107107
OrthologWBGene00062523Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00028349Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00156384Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00122120Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00074029Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00095482Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00225370Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8847Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12893Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16050Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2180Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23784Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g6537Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17894Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8886Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1101Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g12226Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17292Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_03370.g18031Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-bcc-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8023Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00125.g5021Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12826Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014050Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07771Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8789Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40313010Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11763Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241419Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266110Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000003955Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
FB:FBgn0000182Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-110110-3Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-101223-3Danio rerioFrom_analysisHieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:19351Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1933388Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1307459Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00001597Caenorhabditis elegansFrom_analysisPanther
WBGene00007463Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionbcc-1 encodes a homolog of Drosophila and vertebrate Bicaudal C (BICC) that contains KH RNA-binding domains, a serine-rich region, and a SAM (sterile alpha motif) domain; by homology, BCC-1 is predicted to function as a cytoplasmic RNA-binding protein that is required for translational regulation and/or mRNA stability during embryonic or germline development; however, as loss of bcc-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of BCC-1 in C. elegans development and/or behavior is not yet known.Paper_evidenceWBPaper00005566
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable RNA binding activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Is an ortholog of human BICC1 (BicC family RNA binding protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111682Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:19351)
Molecular_info (4)
Experimental_infoRNAi_result (12)
Expr_patternExpr11039
Expr1019741
Expr1154759
Expr2009580
Expr2027817
Drives_constructWBCnstr00017868
WBCnstr00037633
Construct_productWBCnstr00037633
Microarray_results (25)
Expression_cluster (120)
Interaction (32)
Map_infoMapIVPosition4.84895Error0.004289
PositivePositive_cloneM7Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005566
WBPaper00038491
WBPaper00041206
WBPaper00042458
WBPaper00042742
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene