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WormBase Tree Display for Gene: WBGene00000239

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Name Class

WBGene00000239SMapS_parentSequenceC05D2
IdentityVersion1
NameCGC_namebas-1Person_evidenceWBPerson384
Sequence_nameC05D2.4
Molecular_nameC05D2.4a
C05D2.4a.1
CE01141
C05D2.4b
CE37081
C05D2.4b.1
Other_nameCELE_C05D2.4Accession_evidenceNDBBX284603
Public_namebas-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbas
Allele (42)
Legacy_information[C.elegansII] ad446 : serotonin-deficient (nodetectable serotonin immunoreactivity);serotonin immunoreactivity restored by exposure to serotonin, but not to 5-hydroxytryptophan; poor male turning behavior [Loer and Kenyon 1993; LC; DA]
StrainWBStrain00024110
WBStrain00027310
WBStrain00027351
WBStrain00055166
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00055636Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00030647Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
WormBase-Compara
WBGene00134372Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00191203Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222230Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4304Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14167Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1963Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20744Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9610Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15158Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14111Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15964Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7280Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g20271Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19693Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00850.g14551Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10809.g22876Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g9442Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold626.g6373Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03344.g29880Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18518Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010581Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08389Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08390Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g10059Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30131900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7752Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237151Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00091970Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260225Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00296350Trichuris murisFrom_analysisWormBase-Compara
WBGene00296355Trichuris murisFrom_analysisWormBase-Compara
WBGene00296356Trichuris murisFrom_analysisWormBase-Compara
WBGene00298321Trichuris murisFrom_analysisWormBase-Compara
WBGene00301048Trichuris murisFrom_analysisWormBase-Compara
WBGene00301049Trichuris murisFrom_analysisWormBase-Compara
WBGene00301050Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0000075Drosophila melanogasterFrom_analysisOMA
Panther
PhylomeDB
FB:FBgn0000422Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-2656Danio rerioFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
HGNC:2719Homo sapiensFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
MGI:94876Mus musculusFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
RGD:2494Rattus norvegicusFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
Paralog (9)
Structured_descriptionConcise_descriptionbas-1 encodes a serotonin- and dopamine-synthetic aromatic amino acid decarboxylase (AAADC) that is required for the synthesis of serotonin from 5-hydroxytryptophan in vivo; mutations of bas-1 impair the turning step in male mating, the migration of AVM, SDQR, ALM, and BDU neurons during development.Paper_evidenceWBPaper00005551
WBPaper00024422
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated25 Aug 2010 00:00:00
Automated_descriptionPredicted to enable L-dopa decarboxylase activity. Involved in several processes, including locomotion involved in locomotory behavior; phenol-containing compound biosynthetic process; and reproductive behavior. Predicted to be located in cytoplasm. Expressed in dopaminergic neurons; serotonergic neurons; socket cell; tail; and in male. Used to study cocaine abuse and nicotine dependence. Human ortholog(s) of this gene implicated in several diseases, including aromatic L-amino acid decarboxylase deficiency; bipolar disorder; and hyperinsulinism. Is an ortholog of human DDC (dopa decarboxylase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:809Homo sapiensPaper_evidenceWBPaper00034643
Curator_confirmedWBPerson324
Date_last_updated28 May 2019 00:00:00
DOID:0050742Homo sapiensPaper_evidenceWBPaper00046053
Curator_confirmedWBPerson324
Date_last_updated23 May 2019 00:00:00
Potential_modelDOID:3312Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2719)
DOID:0090123Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2719)
DOID:14330Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2719)
DOID:655Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2719)
DOID:2018Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2719)
Models_disease_assertedWBDOannot00000678
WBDOannot00000679
WBDOannot00000680
Molecular_infoCorresponding_CDSC05D2.4a
C05D2.4b
Corresponding_CDS_historyC05D2.4:wp127
C05D2.4:wp135
Corresponding_transcriptC05D2.4a.1
C05D2.4b.1
Other_sequence (45)
Associated_featureWBsf047521
WBsf047522
WBsf645187
WBsf654959
WBsf992453
WBsf992454
WBsf224969
Experimental_infoRNAi_resultWBRNAi00028502Inferred_automaticallyRNAi_primary
WBRNAi00039751Inferred_automaticallyRNAi_primary
WBRNAi00010206Inferred_automaticallyRNAi_primary
WBRNAi00005935Inferred_automaticallyRNAi_primary
WBRNAi00066618Inferred_automaticallyRNAi_primary
WBRNAi00039752Inferred_automaticallyRNAi_primary
Expr_patternExpr3088
Expr11668
Expr15319
Expr16107
Expr1021971
Expr1030153
Expr1143843
Expr2009531
Expr2027768
Drives_constructWBCnstr00005610
WBCnstr00011126
WBCnstr00019307
WBCnstr00037638
WBCnstr00042765
Construct_productWBCnstr00011126
WBCnstr00019307
WBCnstr00037638
WBCnstr00040178
WBCnstr00040179
Microarray_results (25)
Expression_cluster (188)
Interaction (47)
Map_infoMapIIIPosition-1.46925Error0.005315
Well_ordered
PositivePositive_cloneC05D2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point2312
2693
4332
Reference (69)
MethodGene