WormBase Tree Display for Gene: WBGene00000224

WBGene00000224 Evidence: Author_evidence: Veljkovic E
      Verrey F
    From_analysis
  SMap: S_parent: Sequence: F26D10
  Identity: Version: 2
    Name: CGC_name: atgp-1
      Sequence_name: F26D10.9
      Molecular_name: F26D10.9a
        F26D10.9a.1
        CE32183
        F26D10.9b
        CE41226
        F26D10.9b.1
      Other_name: atg-1
        tag-95 CGC_data_submission
        CELE_F26D10.9 Accession_evidence: NDB BX284604
      Public_name: atgp-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: atgp
    Allele (151)
    Strain: WBStrain00035583
    RNASeq_FPKM (74)
    GO_annotation: 00102866
      00102867
      00107057
    Ortholog: WBGene00023839 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00067807 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00154309 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00100383 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00223873 Brugia malayi From_analysis: WormBase-Compara
      WBGene00268383 Brugia malayi From_analysis: WormBase-Compara
      WBGene00268386 Brugia malayi From_analysis: WormBase-Compara
      WBGene00268585 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7956 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g366 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4574 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9101 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3666 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g4265 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26883 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10877 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g813 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1380 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22452 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g28947 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11769 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00438.g10856 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-atgp-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold441.g1178 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01879.g23678 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13801 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008726 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_012040 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03350 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g590 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40210100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12861 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00126066 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00131917 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00218628 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00061500 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00061502 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00083795 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00241024 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00265475 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000000503 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000003519 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000003524 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000003752 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000003757 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000005517 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000001434 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0032381 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0032382 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0002570 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0002569 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0002571 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0033294 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0050359 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0033296 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0033297 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0050360 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-090313-225 Danio rerio From_analysis: Inparanoid
            OMA
            OrthoInspector
            Panther
      HGNC:11025 Homo sapiens From_analysis: Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1195264 Mus musculus From_analysis: Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      RGD:3709 Rattus norvegicus From_analysis: Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00000225 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00008220 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011409 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: atgp-1 encodes a predicted amino acid transporter glycoprotein subunit; when co-expressed in Xenopus oocytes with the AAT-1 or AAT-3 catalytic subunit, ATGP-1 is not able to facilitate amino acid uptake, even though ATGP-1 is able to covalently associate with AAT-1 or AAT-3 in the Xenopus expression system; however, when co-expressed with AAT-9, ATGP-1 is able to enhance the activity of this catalytic subunit; when expressed alone or with AAT-3, ATGP-1 localizes to the cell surface; when co-expressed with AAT-1, ATGP-1 localizes intracellularly. Paper_evidence: WBPaper00006408
            WBPaper00024381
          Curator_confirmed: WBPerson1843
          Date_last_updated: 03 Mar 2006 00:00:00
      Automated_description: Predicted to enable hydrolase activity, acting on glycosyl bonds. Predicted to be involved in carbohydrate metabolic process. Located in plasma membrane. Human ortholog(s) of this gene implicated in cystinuria. Is an ortholog of human SLC3A1 (solute carrier family 3 member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9266 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11025)
  Molecular_info: Corresponding_CDS: F26D10.9a
      F26D10.9b
    Corresponding_CDS_history: F26D10.9:wp88
    Corresponding_transcript: F26D10.9a.1
      F26D10.9b.1
    Other_sequence (93)
    Associated_feature: WBsf646605
      WBsf660980
      WBsf660981
      WBsf717214
      WBsf981871
      WBsf229622
  Experimental_info: RNAi_result: WBRNAi00031434 Inferred_automatically: RNAi_primary
      WBRNAi00013927 Inferred_automatically: RNAi_primary
      WBRNAi00045611 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027197
      Expr1030141
      Expr1149524
      Expr2009498
      Expr2027735
    Drives_construct: WBCnstr00037993
    Construct_product: WBCnstr00037993
    Antibody: WBAntibody00000719
    Microarray_results (21)
    Expression_cluster (181)
    Interaction (33)
  Map_info: Map: IV Position: 16.2882 Error: 0.004481
    Positive: Positive_clone: F26D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4164
    Pseudo_map_position
  Reference: WBPaper00006408
    WBPaper00038491
    WBPaper00039044
    WBPaper00039099
    WBPaper00039519
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene