WormBase Tree Display for Gene: WBGene00000040

WBGene00000040 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: ZK455
  Identity: Version: 1
    Name: CGC_name: aco-1
      Sequence_name: ZK455.1
      Molecular_name: ZK455.1
        ZK455.1.1
        CE03812
      Other_name: gei-22 CGC_data_submission
        CELE_ZK455.1 Accession_evidence: NDB BX284606
      Public_name: aco-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:19 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: aco
    Allele (72)
    Strain: WBStrain00023533
      WBStrain00031712
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog: WBGene00058302 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037008 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00152204 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00108253 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00136817 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g2580 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13382 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7232 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18760 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15830 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10060 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2853 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20647 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16176 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g28789 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12632 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00036.g2029 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_16127.g25267 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-aco-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold31.g129 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00297.g8922 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01132 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023778 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00391 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6816 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0087400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20056 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00259490 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0024957 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0024958 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-031118-76 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-051205-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:117 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:6115 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      MGI:87879 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1928268 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      RGD:2019 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621539 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00000041 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description (2)
  Disease_info: Potential_model: DOID:10652 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6115)
  Molecular_info: Corresponding_CDS: ZK455.1
    Corresponding_transcript: ZK455.1.1
    Other_sequence (60)
    Associated_feature: WBsf648536
      WBsf648537
      WBsf655212
      WBsf663332
      WBsf236371
      WBsf236372
      WBsf236373
      WBsf236374
  Experimental_info: RNAi_result: WBRNAi00038297 Inferred_automatically: RNAi_primary
      WBRNAi00115744 Inferred_automatically: RNAi_primary
      WBRNAi00059431 Inferred_automatically: RNAi_primary
      WBRNAi00115745 Inferred_automatically: RNAi_primary
      WBRNAi00024298 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr434
      Expr2296
      Expr2353
      Expr1021359
      Expr1030020
      Expr1162858
      Expr2009164
      Expr2027401
    Drives_construct: WBCnstr00010755
      WBCnstr00010787
      WBCnstr00018300
      WBCnstr00037777
    Construct_product: WBCnstr00010755
      WBCnstr00010787
      WBCnstr00037777
    Antibody: WBAntibody00000600
    Microarray_results (22)
    Expression_cluster (219)
    Interaction (90)
  Map_info: Map: X Position: 3.01054 Error: 0.014051
    Positive: Positive_clone: ZK455 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4663
        5397
        5493
    Pseudo_map_position
  Reference (21)
  Remark: gei-22 becomes an other name for this gene, main name is aco-1 [JAH][011204 ck1]
    Sequence connection from [Qadota H, Kaibuchi K]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene