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WormBase Tree Display for Gene: WBGene00002979

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Name Class

WBGene00002979SMapS_parentSequenceC46H11
IdentityVersion1
NameCGC_namelfe-2Person_evidenceWBPerson625
Sequence_nameC46H11.4
Molecular_name (16)
Other_nameC46H11.gCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_C46H11.4Accession_evidenceNDBBX284601
Public_namelfe-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlfe
Allele (148)
Legacy_information[Clandinin T] mutations suppress let-23 sterility
[C.elegansII] sy326 : suppresses sterility of let-23 mutations. [PS]
StrainWBStrain00030843
WBStrain00030855
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00072055Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00032069Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00090982Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00129057Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00190490Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223062Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9374Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2130Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11350Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13104Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10682Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g484Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15384Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8009Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g22572Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17918Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00938.g15027Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lfe-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9789Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00432.g11288Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07521Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000301Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10597Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11105Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10256200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g826Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237316Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262605Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285340Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0032147Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-080225-27Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030616-116Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-6009Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-041014-166Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-141216-64Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
SonicParanoid
HGNC:6178Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
HGNC:6179Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
HGNC:14897Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
MGI:1333822Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
MGI:2442554Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
MGI:109235Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
RGD:2932Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
RGD:619950Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
RGD:631336Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
ParalogWBGene00014081Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021260Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020631Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009262Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionlfe-2 encodes an inositol (1,4,5) triphosphate-3-kinase (IP3K); lfe-2 activity is required for normal levels of hermaphrodite fertility and for tissue-specific negative regulation of the LET-23 signaling pathway that controls spermathecal dilation and ovulation; in vitro, LFE-2 can exhibit catalytic activity, converting IP3 to IP4; an lfe-2::GFP transcriptional fusion is expressed in the adult spermatheca and in the pharynx and gut throughout larval and adult stages; misexpression of LFE-2 in gravid adults via heat shock results in ovulation defects, consistent with a role for LFE-2 in regulating this process.Paper_evidenceWBPaper00003017
Curator_confirmedWBPerson1843
Date_last_updated13 Jan 2006 00:00:00
Automated_descriptionPredicted to enable inositol tetrakisphosphate kinase activity and inositol-1,4,5-trisphosphate 3-kinase activity. Predicted to be involved in inositol phosphate biosynthetic process. Predicted to be located in cytoplasm and nucleus. Expressed in spermatheca. Human ortholog(s) of this gene implicated in colorectal cancer. Is an ortholog of human ITPKA (inositol-trisphosphate 3-kinase A); ITPKB (inositol-trisphosphate 3-kinase B); and ITPKC (inositol-trisphosphate 3-kinase C).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:9256Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14897)
Molecular_infoCorresponding_CDSC46H11.4a
C46H11.4b
C46H11.4c
C46H11.4e
C46H11.4f
Corresponding_CDS_historyC46H11.4d:wp273
C46H11.4f:wp261
Corresponding_transcriptC46H11.4a.1
C46H11.4b.1
C46H11.4c.1
C46H11.4e.1
C46H11.4f.1
C46H11.4f.2
Other_sequence (115)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00003167Inferred_automaticallyRNAi_primary
WBRNAi00062776Inferred_automaticallyRNAi_primary
WBRNAi00027799Inferred_automaticallyRNAi_primary
WBRNAi00042628Inferred_automaticallyRNAi_primary
WBRNAi00062771Inferred_automaticallyRNAi_primary
WBRNAi00007487Inferred_automaticallyRNAi_primary
WBRNAi00003168Inferred_automaticallyRNAi_primary
WBRNAi00066573Inferred_automaticallyRNAi_primary
WBRNAi00003166Inferred_automaticallyRNAi_primary
WBRNAi00042627Inferred_automaticallyRNAi_primary
Expr_patternExpr505
Expr1017641
Expr1031379
Expr1146612
Expr2013089
Expr2031321
Drives_constructWBCnstr00012404
WBCnstr00036310
Construct_productWBCnstr00036310
Microarray_results (47)
Expression_cluster (149)
Interaction (55)
WBProcessWBbiopr:00000067
Map_infoMapIPosition-0.423671Error0.000969
PositivePositive_cloneC46H11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4461
4474
Pseudo_map_position
ReferenceWBPaper00003017
WBPaper00003617
WBPaper00003861
WBPaper00003990
WBPaper00004293
WBPaper00005268
WBPaper00005792
WBPaper00017105
WBPaper00017443
WBPaper00018092
WBPaper00022487
WBPaper00022890
WBPaper00023020
WBPaper00025669
WBPaper00026831
WBPaper00027099
WBPaper00027238
WBPaper00028479
WBPaper00028886
WBPaper00029345
WBPaper00030927
WBPaper00031334
WBPaper00038491
WBPaper00039056
WBPaper00042394
WBPaper00046355
WBPaper00055090
RemarkMap I
lfe-2 was previously attached to C46H11.5 which has since become a splice variant of C46H11.4
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene