WormBase Tree Display for Gene: WBGene00002058

WBGene00002058 SMap: S_parent: Sequence: F25E2
  Identity: Version: 1
    Name: CGC_name: ifd-2
      Sequence_name: F25E2.4
      Molecular_name: F25E2.4
        F25E2.4.1
        CE07133
      Other_name: IF D2
        CELE_F25E2.4 Accession_evidence: NDB BX284606
      Public_name: ifd-2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ifd
    Allele (27)
    Strain: WBStrain00002946
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00060227 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029970 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00124420 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00088094 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g3501 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g9038 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP31.g11475 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g18685 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g4257 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00751.g13866 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ifd-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold412.g1074 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00168.g6144 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03199 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_022210 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_X0016300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18332 Caenorhabditis elegans From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-980526-221 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-990415-83 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-990415-207 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-990914-3 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-011212-3 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-030131-7320 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-040426-1743 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-040801-221 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-050417-50 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-050506-95 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-090312-205 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-030131-2830 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-060312-16 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-050208-726 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-060421-4592 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-060316-3 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-061027-102 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-000607-83 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-070209-50 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-070822-8 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
      HGNC:2770 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:4235 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6445 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6446 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6421 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6423 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6427 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6448 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6449 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6451 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6458 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6460 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6462 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6463 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:9461 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:12692 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6456 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6455 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6454 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:6057 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:30841 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:30840 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      MGI:94885 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:95697 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:109362 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:96705 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:98932 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:1928858 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:2146034 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:96704 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:3665486 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:3629975 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:3690448 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      RGD:2679 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      RGD:3414 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
    Paralog (12)
    Structured_description: Concise_description: ifd-2 encodes a nonessential intermediate filament protein; IFD-2 is predicted to function as a structural component of the cytoskeleton; IFD-2 has no obvious function in RNAi assays. Paper_evidence: WBPaper00004761
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in cellular localization; heterochromatin formation; and nucleus organization. Predicted to be located in nuclear envelope and nuclear lamina. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; autoimmune disease (multiple); carcinoma (multiple); and intrinsic cardiomyopathy (multiple). Is an ortholog of several human genes including DES (desmin); GFAP (glial fibrillary acidic protein); and KRT7 (keratin 7). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (34)
  Molecular_info: Corresponding_CDS: F25E2.4
    Corresponding_transcript: F25E2.4.1
    Other_sequence: CR05859
      CRC09035_1
    Associated_feature: WBsf653667
      WBsf670082
      WBsf670083
      WBsf236963
  Experimental_info: RNAi_result: WBRNAi00062660 Inferred_automatically: RNAi_primary
      WBRNAi00013868 Inferred_automatically: RNAi_primary
      WBRNAi00062655 Inferred_automatically: RNAi_primary
      WBRNAi00112379 Inferred_automatically: RNAi_primary
      WBRNAi00045498 Inferred_automatically: RNAi_primary
      WBRNAi00031370 Inferred_automatically: RNAi_primary
      WBRNAi00062656 Inferred_automatically: RNAi_primary
      WBRNAi00007223 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr3397
      Expr5854
      Expr15264
      Expr1019487
      Expr1031211
      Expr1149417
      Expr2012684
      Expr2030920
    Drives_construct: WBCnstr00003452
      WBCnstr00036486
      WBCnstr00042145
    Construct_product: WBCnstr00036486
      WBCnstr00042145
    Antibody: WBAntibody00000797
    Microarray_results (16)
    Expression_cluster (248)
    Interaction (24)
  Map_info: Map: X Position: -19.4996
    Positive: Positive_clone: F25E2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004761
    WBPaper00027245
    WBPaper00028945
    WBPaper00038491
    WBPaper00055090
    WBPaper00056033
    WBPaper00056896
    WBPaper00057164
    WBPaper00058256
    WBPaper00058422
    WBPaper00059330
    WBPaper00063976
    WBPaper00065558
    WBPaper00065788
  Remark: Sequence connection from [Karabinos A, Weber K]. krb 13/11/01
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene