WormBase Tree Display for Gene: WBGene00002054

WBGene00002054 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F10C1
  Identity: Version: 1
    Name: CGC_name: ifb-2 Person_evidence: WBPerson105
            WBPerson293
      Sequence_name: F10C1.7
      Molecular_name: F10C1.7a
        F10C1.7a.1
        CE02622
        F10C1.7c
        CE27941
        F10C1.7e
        CE48309
        F10C1.7c.1
        F10C1.7e.1
      Other_name: IF b2 Accession_evidence: EMBL X78553
        CelIF b2
        CELE_F10C1.7 Accession_evidence: NDB BX284602
      Public_name: ifb-2
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ifb
    Allele (87)
    Strain: WBStrain00036909
    RNASeq_FPKM (74)
    GO_annotation (19)
    Contained_in_operon: CEOP2220
    Ortholog: WBGene00025538 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00193477 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150017 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00119841 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00057289 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g7085 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7804 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5501 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12668 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12248 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3733 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g3735 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13877 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g17945 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12152 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g21464 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5262 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g5264 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g7060 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00060.g3016 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_08146.g21320 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_14752.g24775 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_23297.g26989 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ifb-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19404 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00079.g3591 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_04405 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006114 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_20115710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4599 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00208837 Caenorhabditis japonica From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-020424-3 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-020424-4 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:6638 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
            SonicParanoid
      MGI:96691 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
      MGI:96693 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
      MGI:96699 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:96701 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:1861586 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:1921377 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
      MGI:1923500 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:3607712 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:2385030 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:3588209 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:3646318 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:2911 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
      RGD:2984 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1310865 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1359576 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1359597 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1359664 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1359272 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1565564 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:727894 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1302968 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1303216 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1303297 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1303078 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1588056 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1584538 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1583372 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
    Paralog (12)
    Structured_description: Concise_description: ifb-2 encodes an intermediate filament protein; IFB-2 is expressed exclusively in the intestine and functions as a structural component of the intestinal terminal web; within the terminal web, IFB-2 localizes to a discrete substructure known as the endotube. Paper_evidence: WBPaper00001981
            WBPaper00004761
            WBPaper00040246
            WBPaper00040999
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 31 Mar 2014 00:00:00
      Automated_description: Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in cellular localization; heterochromatin formation; and nucleus organization. Located in apical cortex; cell junction; and terminal web. Expressed in intestine. Human ortholog(s) of this gene implicated in partial lipodystrophy; primary autosomal recessive microcephaly; and progressive myoclonus epilepsy 9. Is an ortholog of human LMNB2 (lamin B2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111450 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6638)
      DOID:0070296 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6638)
      DOID:0080299 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6638)
  Molecular_info: Corresponding_CDS: F10C1.7a
      F10C1.7c
      F10C1.7e
    Corresponding_CDS_history: F10C1.7b:wp86
      F10C1.7d:wp86
    Corresponding_transcript: F10C1.7a.1
      F10C1.7c.1
      F10C1.7e.1
    Other_sequence (11)
    Associated_feature: WBsf644222
      WBsf657615
      WBsf716987
      WBsf987950
      WBsf987951
      WBsf221327
  Experimental_info: RNAi_result: WBRNAi00062660 Inferred_automatically: RNAi_primary
      WBRNAi00030750 Inferred_automatically: RNAi_primary
      WBRNAi00044220 Inferred_automatically: RNAi_primary
      WBRNAi00007219 Inferred_automatically: RNAi_primary
      WBRNAi00062659 Inferred_automatically: RNAi_primary
      WBRNAi00062648 Inferred_automatically: RNAi_primary
      WBRNAi00113732 Inferred_automatically: RNAi_primary
      WBRNAi00065111 Inferred_automatically: RNAi_primary
      WBRNAi00062647 Inferred_automatically: RNAi_primary
      WBRNAi00113728 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00000753
      WBCnstr00008798
      WBCnstr00008801
      WBCnstr00036490
    Construct_product: WBCnstr00000753
      WBCnstr00009121
      WBCnstr00036490
      WBCnstr00038174
      WBCnstr00038430
    Antibody: WBAntibody00000056
      WBAntibody00000795
      WBAntibody00002280
    Microarray_results (39)
    Expression_cluster (271)
    Interaction (109)
  Map_info: Map: II Position: -0.954772 Error: 0.000663
    Positive: Positive_clone: F10C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00001981
    WBPaper00004761
    WBPaper00005295
    WBPaper00006463
    WBPaper00015740
    WBPaper00024261
    WBPaper00024816
    WBPaper00024817
    WBPaper00025137
    WBPaper00027245
    WBPaper00029075
    WBPaper00029128
    WBPaper00031849
    WBPaper00036205
    WBPaper00036800
    WBPaper00037517
    WBPaper00038491
    WBPaper00040246
    WBPaper00040999
    WBPaper00045520
    WBPaper00045625
    WBPaper00055090
    WBPaper00056033
    WBPaper00056896
    WBPaper00057164
    WBPaper00057758
    WBPaper00057845
    WBPaper00059330
    WBPaper00060839
    WBPaper00061750
    WBPaper00063081
    WBPaper00064208
    WBPaper00065312
    WBPaper00065558
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene