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WormBase Tree Display for Gene: WBGene00223281

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Name Class

WBGene00223281SMapS_parentSequenceBm_v4_Chr2_contig_001
IdentityVersion6
NameCGC_nameBma-cpn-2From_analysisInferred_from_orthology
Sequence_nameBm3020
Molecular_nameBm3020a
Bm3020a.1
BM27013
Bm3020b
BM47766
Bm3020b.1
Other_nameBm-cpn-2
TAG3020Curator_confirmedWBPerson4055
Public_nameBma-cpn-2
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:24WBPerson4055EventCreated
205 Jul 2013 11:43:21WBPerson4055Name_changeCGC_nameBma-cpn-2
Other_nameBm-cpn-2
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:26WBPerson1983Name_changeCGC_nameBma-cpn-2
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:29WBPerson1983Name_changeCGC_nameBma-cpn-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
RNASeq_FPKMWBls:000009720.3587From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
0.964813From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
19.5341From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
2.51707From_analysisRNASeq.brugia.WBls:0000097.control_median
29.3319From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
4.06932From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
8.98336From_analysisRNASeq.brugia.WBls:0000097.control_mean
WBls:00000780.999441From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
11.0986From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
14.8721From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
1.79765From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
25.9894From_analysisRNASeq.brugia.WBls:0000078.control_mean
73.2589From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
79.899From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:000008036.6084From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
43.08From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
58.4821From_analysisRNASeq.brugia.WBls:0000080.control_median
59.7571From_analysisRNASeq.brugia.WBls:0000080.control_mean
73.8841From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
85.4561From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (24)
WBls:000008211.7148From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
13.067From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
17.8052From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
34.5899From_analysisRNASeq.brugia.WBls:0000082.control_mean
51.6855From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
78.6772From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (82)
WBls:000009213.3628From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
15.2492From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
17.1356From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009415.0684From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
17.4144From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
19.7604From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000010113.0169From_analysisRNASeq.brugia.total_over_all_stages.control_median
25.9508From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:00006621.42715From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
2.85429From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:00006631.66318From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
OrthologWBGene00159661Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00029225Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CBOVI.g7174Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g286Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21314Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18321Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17504Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25608Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g875Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8426Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28510Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22512Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00630.g12977Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cpn-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold605.g5606Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00467.g11758Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14341Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008142Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02033Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18996Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20002100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00000778Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00064707Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00108049Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00131242Caenorhabditis japonicaFrom_analysisWormBase-Compara
chrII_pilon.g3093Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248048Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267635Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285365Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00223171Brugia malayiFrom_analysisWormBase-Compara
WBGene00223447Brugia malayiFrom_analysisWormBase-Compara
WBGene00223943Brugia malayiFrom_analysisWormBase-Compara
WBGene00225047Brugia malayiFrom_analysisWormBase-Compara
WBGene00226271Brugia malayiFrom_analysisWormBase-Compara
WBGene00231502Brugia malayiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Calponin family repeat; Calponin repeat; Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm3020a
Bm3020b
Corresponding_transcriptBm3020a.1
Bm3020b.1
Other_sequence (42)
Experimental_infoExpression_clusterWBPaper00051007:downregulated_F30_vs_L4
WBPaper00051007:downregulated_M30_vs_F30
WBPaper00051007:upregulated_F120_vs_F30
WBPaper00051007:upregulated_F120_vs_F42
WBPaper00061765:L3_vs_Adult_Downregulated
WBPaper00061765:L4_vs_Adult_Downregulated
WBPaper00061765:L4_vs_Micro_Downregulated
ReferenceWBPaper00050934
Remark[190208 pad] The CGC name Bma-cpn-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Bma-cpn-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene