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WormBase Tree Display for Gene: WBGene00248048

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Name Class

WBGene00248048SMapS_parentSequenceOVOC_OM4_121
IdentityVersion2
NameCGC_nameOvo-cpn-2From_analysisInferred_from_orthology
Sequence_nameOVOC11239
Molecular_nameOVOC11239
OVOC11239.1
OVP06384
Public_nameOvo-cpn-2
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:34WBPerson3111EventImportedMAKER import
224 Jan 2014 16:01:34WBPerson4055Name_changeCGC_nameOvo-cpn-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
RNASeq_FPKMWBls:000010117.5425From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
6.60417From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
WBls:0000104 (16)
WBls:000010718.534From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010818.4266From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
26.4511From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
4.56952From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
56.3571From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
WBls:000066420.2111From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
34.3768From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
6.04549From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
OrthologWBGene00159661Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00029225Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00223281Brugia malayiFrom_analysisWormBase-Compara
WBGene00000778Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00131242Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g7174Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g286Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21314Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18321Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17504Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25608Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g875Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8426Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28510Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22512Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00630.g12977Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cpn-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold605.g5606Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00467.g11758Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14341Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008142Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02033Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18996Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20002100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00064707Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00108049Pristionchus pacificusFrom_analysisWormBase-Compara
chrII_pilon.g3093Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00267635Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285365Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00237446Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00237667Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00237669Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00239807Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00243222Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248765Onchocerca volvulusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Calponin family repeat; Calponin repeat; Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC11239
Corresponding_transcriptOVOC11239.1
Other_sequenceJI460043.1
JI212853.1
Oden_isotig07250
Tcir_isotig05129
ACC03235_1
Oden_isotig07249
Acan_isotig11727
ACC22193_1
MJC00545_1
Name_isotig00604
Acan_isotig11353
Acan_isotig23281
Oden_isotig07254
HBC04773_1
JI474885.1
Oden_isotig07251
EX010145.1
FG580915.1
CR12606
BUC00870_1
CB039043.1
ACC36702_1
Acan_isotig20582
PPC17229_1
EX549108.1
TDC00544_1
Oden_isotig07253
FG352245.1
MJ01043
Oden_isotig07252
CJC00608_1
TS00685
EX010589.1
MH09917
MHC07738_1
ES741882.1
Dviv_isotig35557
JI472482.1
EX536319.1
BMC08830_1
EX911755.1
Dviv_isotig23264
Dviv_isotig29203
Tcir_isotig07995
FF681376.1
JI478003.1
JI225969.1
Name_isotig08749
Hbac_isotig03334
MethodGene