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WormBase Tree Display for Gene: WBGene00008041

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Name Class

WBGene00008041SMapS_parentSequenceC40H1
IdentityVersion2
NameCGC_nameufc-1Paper_evidenceWBPaper00042074
Sequence_nameC40H1.6
Molecular_nameC40H1.6
C40H1.6.1
CE00114
Other_nameCELE_C40H1.6Accession_evidenceNDBBX284603
Public_nameufc-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
204 Jun 2013 14:47:04WBPerson2970Name_changeCGC_nameufc-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classufc
Allele (14)
RNASeq_FPKM (74)
GO_annotation00052388
00052389
00052390
00052391
00115999
00116000
OrthologWBGene00055122Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00031590Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00146408Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131202Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00090480Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00217149Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00222946Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5813Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7038Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18155Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20073Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3303Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10480Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8537Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6396Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g7436Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3336Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00246.g7811Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ufc-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9398Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01008.g17534Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07439Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009406Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04786Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13198Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30267200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8591Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245384Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00261648Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291406Trichuris murisFrom_analysisWormBase-Compara
WBGene00296020Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0034061Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040801-268Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:26941Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1913405Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1303313Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionEnables ubiquitin conjugating enzyme binding activity. Predicted to be involved in protein ufmylation. Located in striated muscle dense body. Expressed in intestine and neurons. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with spasticity and poor growth. Is an ortholog of human UFC1 (ubiquitin-fold modifier conjugating enzyme 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0070421Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:26941)
Molecular_infoCorresponding_CDSC40H1.6
Corresponding_transcriptC40H1.6.1
Other_sequenceOden_isotig02436
DAC01509_1
OVC03186_1
TSC04786_1
Dviv_isotig11324
MJ02259
TS05819
HGC10734_1
CBC02586_1
MJC01281_1
MCC00771_1
RSC01693_1
Tcol_isotig14602
EX550945.1
HG00236
Dviv_isotig11322
Tcir_isotig28216
PTC03492_1
MJ04735
HGC01418_1
DA03325
RS10887
TV01033
Acan_isotig04865
MAC00481_1
JI176271.1
EX534965.1
CJC11112_1
Dviv_isotig11323
EX564534.1
ES567955.1
MPC01082_1
MI05379
Dviv_isotig11321
PPC02230_1
TVC00935_1
Tcol_isotig06634
MA01170
EX557247.1
HBC28287_1
MP00649
MIC03758_1
BXC07289_1
ACC03361_1
AW562273.1
ES409947.1
Tcir_isotig07893
Dviv_isotig34807
Tcol_isotig06635
RS06002
FG352087.1
Oden_isotig02437
MC00217
HG07423
PT03731
FG586560.1
Associated_featureWBsf645476
WBsf645477
WBsf225551
Experimental_infoRNAi_resultWBRNAi00109724Inferred_automaticallyRNAi_primary
WBRNAi00109818Inferred_automaticallyRNAi_primary
WBRNAi00109677Inferred_automaticallyRNAi_primary
WBRNAi00042262Inferred_automaticallyRNAi_primary
WBRNAi00006787Inferred_automaticallyRNAi_primary
WBRNAi00029712Inferred_automaticallyRNAi_primary
WBRNAi00109771Inferred_automaticallyRNAi_primary
Expr_patternExpr27
Expr9376
Expr10626
Expr1013690
Expr1033495
Expr1146253
Expr2017746
Expr2035885
Drives_constructWBCnstr00017405
WBCnstr00033282
Construct_productWBCnstr00013941
WBCnstr00033282
Microarray_results (20)
Expression_cluster (99)
SAGE_tagSAGE:gatggctgttgagattcStrandSense
Unambiguously_mapped
SAGE:gatggctgttStrandSense
Unambiguously_mapped
SAGE:ttatggaagtStrandAntisense
SAGE:gtcaagtacgagtttgaStrandSense
Unambiguously_mapped
SAGE:gtcccaatccgagagcgStrandAntisense
SAGE:gtcaagtacgStrandSense
Unambiguously_mapped
Interaction (38)
Map_infoMapIIIPosition0.416172
PositivePositive_cloneC40H1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038444
WBPaper00038491
WBPaper00044965
WBPaper00055090
WBPaper00063946
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene