WormBase Tree Display for Gene: WBGene00004472

WBGene00004472 SMap: S_parent: Sequence: C23G10
  Identity: Version: 1
    Name: CGC_name: rps-3
      Sequence_name: C23G10.3
      Molecular_name: C23G10.3
        C23G10.3.1
        CE01810
      Other_name: CELE_C23G10.3 Accession_evidence: NDB BX284603
      Public_name: rps-3
    DB_info: Database: AceView gene 3H297
        WormQTL gene WBGene00004472
        WormFlux gene WBGene00004472
        NDB locus_tag CELE_C23G10.3
        Panther gene CAEEL|WormBase=WBGene00004472|UniProtKB=P48152
          family PTHR11760
        NCBI gene 175879
        RefSeq protein NM_065948.6
        SwissProt UniProtAcc P48152
        TREEFAM TREEFAM_ID TF300901
        UniProt_GCRP UniProtAcc P48152
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (23)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps3 using blastP
    Strain: WBStrain00003358
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP3356
    Ortholog: WBGene00055408 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00042417 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144972 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00114199 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00137169 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00222581 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5164 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1790 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6020 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11951 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14881 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6568 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6419 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3776 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18597 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8966 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11272 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00349.g9583 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rps-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold596.g5263 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01577.g21849 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08863 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010784 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08275 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g17387 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30151200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7880 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244977 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261203 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287884 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005122 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0002622 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8494 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10420 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1350917 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:619888 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1560831 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rps-3 encodes a small ribosomal subunit S3 protein that contains a KH RNA-binding domain and by homology,is predicted to function in protein biosynthesis; in C. elegans, RPS-3 activity is required for embryonic and germline development, as well as the overall health of the animal. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of apoptotic signaling pathway. Predicted to be located in nucleus. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS3 (ribosomal protein S3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C23G10.3
    Corresponding_transcript: C23G10.3.1
    Other_sequence: CR07085
      AI381165.1
      NBC01061_1
      FC811501.1
      EX013354.1
      ES739582.1
      ASC38508_1
      HGC02124_1
      CR04907
      MH06658
      ACC01037_1
      BXC00468_1
      HGC10305_1
      ACC11643_1
      AYC00182_1
      CBC01096_1
      EX012560.1
      EX915802.1
      EH005564.1
      HBC00035_2
      EX007751.1
      ES742845.1
      ES739900.1
      CR11061
      JI172016.1
      EX009648.1
      AE01233
      JI482274.1
      PPC00806_1
      PPC04564_1
      EW742726.1
      ZPC00030_1
      FE907297.1
      BE638310.1
      Tcol_isotig04502
      ES562439.1
      EX553641.1
      AA294013.1
      BMC12301_1
      HCC02108_1
      GE638188.1
      AS04504
      HG11029
      CRC07513_1
      EX910364.1
      TSC01693_1
      ES408922.1
      EX915630.1
      AA294391.1
      DN557527.1
      AW203900.1
      FE920161.1
      EX910899.1
      Oden_isotig17464
      FC821105.1
      DN557061.1
      ES880292.1
      FG582832.1
      EX007242.1
      GR979229.1
      EX913785.1
      FE920064.1
      EX915693.1
      Tcol_isotig04500
      EX911595.1
      ES411867.1
      ES741350.1
      SRC00684_1
      ES413136.1
      Tcir_isotig05016
      CRC00030_1
      ES414084.1
      OVC05978_1
      HC01677
      PT00769
      ES413157.1
      FC821071.1
      SSC03217_1
      EX014060.1
      HGC05502_1
      GO239299.1
      HG07462
      EX915682.1
      EX501975.1
      EX914136.1
      CBC03052_1
      PTC03609_1
      Hbac_isotig00770
      PP00643
      ES739418.1
      TX00580
      DIC01834_1
      ES566345.1
      AE01587
      EX916084.1
      JO468652.1
      FD517630.1
      CBC04204_1
      ASC28241_1
      FC811880.1
      MJC00436_1
      FC814844.1
      HS00404
      CD374267.1
      AI438326.1
      Tcir_isotig32741
      HCC02446_1
      AA190248.1
      MH00515
      FE913624.1
      CBC08956_1
      XI03785
      FC821087.1
      FE915553.1
      FD516365.1
      XI00432
      ACC29827_1
      PTC00241_1
      MJ01412
      ES408825.1
      BU087677.1
      CJC12348_1
      JI463804.1
      PT00016
      CR10463
      AIC00195_1
      Tcir_isotig20721
      AS17197
      BUC01410_1
      ES410549.1
      CR02608
      EX008208.1
      TCC02487_1
      EX008965.1
      Acan_isotig00812
      EX009795.1
      GRC00224_1
      SR01086
      CGC00473_1
      CR03080
      Tcol_isotig04501
      ES562105.1
      Acan_isotig11065
      FE916454.1
      FD517496.1
      DI02242
      EX009722.1
      GU130136.1
      FE916142.1
      FC809546.1
      FE919758.1
      CRC11147_1
      CR06584
      CR07189
      OVC06400_1
      TM01700
      EX559663.1
      ES570362.1
      MHC10242_1
      CK850441.1
      NB07636
      HSC00300_1
      OOC03407_1
      CR08681
      EX911634.1
      EW741615.1
      PPC00274_1
      Tcir_isotig05015
      FE913333.1
      SRC00048_1
      ES408655.1
      CR09177
      BE132629.1
      EG025805.1
      EX007858.1
      CRC04435_1
      CR08275
      FE919890.1
      ES740954.1
      MI02218
      EX560309.1
      GPC01149_1
      FE919160.1
      PTC00028_1
      EX015230.1
      ES740168.1
      TS01811
      Name_isotig01525
      XIC00884_1
      Oden_isotig17463
      SS01475
      AYC02555_1
      FE919268.1
      EX561974.1
      ES743451.1
      EX910151.1
      ASC00823_1
      ZP00048
      FE919046.1
      ES566340.1
      JK315807.1
      ACC38738_1
      EX009042.1
      NAC01846_1
      SRC00048_2
      PT00061
      CR03196
      ES413849.1
      EX007232.1
      NB07654
      MCC05370_1
      PT00823
      FK805350.1
      JI475015.1
      CRC00829_1
      HCC03844_1
      FE918930.1
      CJC01042_1
      CSC00145_1
      ES566084.1
      ES409364.1
      EX014186.1
      PSC01246_1
      CR10500
      BMC12302_1
      EX010135.1
      FC817043.1
      WBC00086_1
      Dviv_isotig16146
      TSC10840_1
      MIC06596_1
      FD515318.1
      EX500490.1
      CR12471
      HC03803
      OVC00389_1
      HG11509
      PT03221
      SC00464
      AS03118
      CR10891
      ES409373.1
      SSC02804_1
      FD514443.1
      AE00792
      EG025806.1
      FC813124.1
      FE920066.1
      CGC00219_1
      TMC00836
      GR977453.1
      HG03511
      FG618971.1
      ES412510.1
      GW410364.1
      PTC00246_1
      XI01911
      AI317887.1
      Tcir_isotig17397
      AA104006.1
      MPC00144_1
      FE919822.1
      HGC09198_1
      EX010355.1
      ES742357.1
      TLC00008_1
      AW409558.1
      DA00413
      GW408655.1
      ES413879.1
      CRC04337_1
      ASC22323_1
      XI00415
      CRC09796_1
      CR10315
      FD514578.1
      ES412320.1
      HC02288
      MJC01292_1
      XIC03334_1
      Dviv_isotig16147
      AI305127.1
      MJ03603
      EX915355.1
      AW739456.1
      ES741145.1
      PT00421
      HCC00633_1
      EX543831.1
      PTC03193_1
      FE911674.1
      BMC06743_1
      CJC08389_1
      GR13476
      CR11406
      ES739273.1
      LSC00388_1
      ES410911.1
      BF400500.1
      EX915088.1
      Tcir_isotig12232
      CR02882
      GRC02669_1
      FE918989.1
      ES413914.1
      ES411745.1
      HGC00687_1
      TM01246
      FC821063.1
      EX009723.1
      PT04148
      XIC02140_1
      HG11755
      ES565873.1
      MH08662
      CJC02631_1
      FC821720.1
      ES412492.1
      XIC01534_1
      MHC01907_1
      FE913420.1
      FE915777.1
      DAC00042_1
      FC817462.1
      HBC14136_1
      MC00908
      MIC06596_2
      GR11964
      CRC00059_1
      GR367692.1
      SR01047
      SC01144
      GP01745
      MP00592
      AE01538
    Associated_feature: WBsf654967
      WBsf658521
      WBsf659036
      WBsf992675
  Experimental_info: RNAi_result (29)
    Expr_pattern: Chronogram1016
      Expr1022377
      Expr1032275
      Expr1145052
      Expr2015527
      Expr2033762
    Drives_construct: WBCnstr00003829
      WBCnstr00035458
    Construct_product: WBCnstr00035458
    Antibody: WBAntibody00002839
    Microarray_results (21)
    Expression_cluster (157)
    Interaction (338)
  Map_info: Map: III Position: -1.40877 Error: 0.00017
    Positive: Positive_clone: C23G10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029254
    WBPaper00035228
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00063976
    WBPaper00064257
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene