WormBase Tree Display for Gene: WBGene00003925

WBGene00003925 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C36B1
  Identity: Version: 1
    Name: CGC_name: pas-4 Person_evidence: WBPerson1551
      Sequence_name: C36B1.4
      Molecular_name: C36B1.4
        C36B1.4.1
        CE05371
      Other_name: CELE_C36B1.4 Accession_evidence: NDB BX284601
      Public_name: pas-4
    DB_info: Database: AceView gene 1J304
        WormQTL gene WBGene00003925
        WormFlux gene WBGene00003925
        NDB locus_tag CELE_C36B1.4
        Panther gene CAEEL|WormBase=WBGene00003925|UniProtKB=Q95005
          family PTHR11599
        NCBI gene 172679
        RefSeq protein NM_059959.7
        SwissProt UniProtAcc Q95005
        TREEFAM TREEFAM_ID TF106212
        UniProt_GCRP UniProtAcc Q95005
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pas
    Allele (17)
    Strain: WBStrain00002987
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog: WBGene00060022 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033311 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00152237 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096042 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00160593 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00135621 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00212600 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00233936 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9118 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14490 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10163 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1615 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g713 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7748 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g988 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8729 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22113 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24262 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00204.g6941 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pas-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20521 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00281.g8632 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05058 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002548 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11835 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11838 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11783 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10247020 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1657 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237580 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259647 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285589 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005398 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0004066 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0017556 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0265606 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2194 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9536 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:22985 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1347070 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1920927 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:61851 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1311659 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (13)
    Structured_description: Concise_description: pas-4 encodes a proteasome alpha-type seven subunit of the core 20S proteasome subcomplex; loss of pas-4 activity via RNAi results in a wide variety of defects including embryonic and larval lethality, sterility, abnormal locomotion, slow growth, and abnormal transgene expression and subcellular localization; loss of pas-4 activity also results in activation of SKN-1, a transcription factor required in adult worms for the acute response to oxidative stress and maternally for embryonic development. Paper_evidence: WBPaper00004402
            WBPaper00006395
            WBPaper00006510
            WBPaper00024497
            WBPaper00025054
            WBPaper00028383
            WBPaper00030965
          Curator_confirmed: WBPerson1843
          Date_last_updated: 18 Jan 2008 00:00:00
      Automated_description: Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Expressed in tail. Is an ortholog of human PSMA7 (proteasome 20S subunit alpha 7) and PSMA8 (proteasome 20S subunit alpha 8). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C36B1.4
    Corresponding_transcript: C36B1.4.1
    Other_sequence: CBC01450_1
      CBC11063_1
      TSC09051_1
      EX560127.1
      JI177605.1
      MCC05897_1
      EX913434.1
      ES561763.1
      EX565566.1
      XIC04674_1
      Acan_isotig16701
      HCC02765_1
      JO475201.1
      JI175554.1
      HC04313
      CBC12203_1
      EX011301.1
      ASC22268_1
      AS02510
      Dviv_isotig23925
      MIC02954_1
      Acan_isotig17636
      Oden_isotig03564
      FE918748.1
      AE03272
      SSC01481_1
      MC05227
      JI178743.1
      FE906152.1
      NBC03968_1
      EX010288.1
      ACC27829_1
      GW411111.1
      Name_isotig04873
      AS09567
      MA00145
      Tcir_isotig06582
      EX009160.1
      BUC02285_1
      PTC03385_1
      NB08812
      FE919454.1
      MAC00640_1
      Oden_isotig03565
      PTC00207_1
      ES409665.1
      ASC23556_1
      BXC02867_1
      PPC07237_1
      PSC03688_1
      CR02188
      JI171448.1
      Acan_isotig10442
      SS03260
      EX914939.1
      ES569810.1
      MIC06652_1
      AYC01923_1
      ACC06787_1
      Oden_isotig03566
      Oden_isotig03563
      FE919873.1
      EX543806.1
      PT00956
      AS07829
      ASC03739_1
      FG620458.1
      JI174671.1
      ES561776.1
      EX558604.1
      MHC08555_1
      TDC02266_1
      Hbac_isotig02963
      FE919856.1
      GRC02017_1
      MH10200
      CRC02943_1
      HBC01324_1
      HG10360
      GR13159
      BG734433.1
      JO467755.1
      FE920158.1
      HGC09020_1
      CJC01632_1
      AS11726
      EX910670.1
      ASC05661_1
      Tcol_isotig15662
      FE920142.1
      EX500304.1
      Oden_isotig03567
      XI00720
      PT03798
    Associated_feature: WBsf649413
      WBsf984491
      WBsf1010268
      WBsf219969
      WBsf219970
  Experimental_info: RNAi_result (25)
    Expr_pattern: Chronogram1931
      Chronogram1944
      Expr5441
      Expr1010437
      Expr1031858
      Expr1146036
      Expr2014743
      Expr2032977
    Drives_construct: WBCnstr00003489
      WBCnstr00035793
    Construct_product: WBCnstr00035793
    Microarray_results (23)
    Expression_cluster (168)
    Interaction (360)
  Map_info: Map: I Position: 3.03696 Error: 0.000521
    Positive: Positive_clone: C36B1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene