WormBase Tree Display for Gene: WBGene00001522

WBGene00001522 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: D2089
  Identity: Version: 1
    Name: CGC_name: gbh-1 Person_evidence: WBPerson52
      Sequence_name: D2089.5
      Molecular_name: D2089.5
        D2089.5.1
        CE00940
      Other_name: CELE_D2089.5 Accession_evidence: NDB BX284602
      Public_name: gbh-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:24 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gbh
    Allele (59)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00053436 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025977 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00151311 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00126578 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00097749 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g6942 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11141 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1668 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12297 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9163 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16548 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16787 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7697 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12500 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5591 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17316 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00208.g7030 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00208.g7032 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-gbh-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18395 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18397 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01036.g17806 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23077 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005477 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g12949 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20288900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5792 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00266679 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000001013 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
      FB:FBgn0030575 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0033830 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0014903 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-050417-218 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:964 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1891372 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:619756 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00001523 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: gbh-1 encodes a predicted ortholog of human hBBOX1; expressed in the intestine and in head and body muscles. Paper_evidence: WBPaper00018600
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable gamma-butyrobetaine dioxygenase activity and iron ion binding activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be located in mitochondrion. Is an ortholog of human BBOX1 (gamma-butyrobetaine hydroxylase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D2089.5
    Corresponding_transcript: D2089.5.1
    Other_sequence: HC08865
      JO469796.1
      JI170248.1
      Oden_isotig07794
      Tcir_isotig09483
      HCC11410_1
      AE00154
      AE04766
      Tcol_isotig08922
      Tcol_isotig24266
      Oden_isotig07798
      Tcir_isotig03079
      Tcol_isotig08923
      Oden_isotig07796
      Oden_isotig07797
      Oden_isotig07799
      Hbac_isotig04839
      AYC03765_1
      Acan_isotig22549
      Acan_isotig15139
      Oden_isotig07795
      Tcir_isotig03080
      Oden_isotig07800
      AF526942.1
      FG977108.1
      HBC26110_1
    Associated_feature: WBsf650516
  Experimental_info: RNAi_result: WBRNAi00002369 Inferred_automatically: RNAi_primary
      WBRNAi00043512 Inferred_automatically: RNAi_primary
      WBRNAi00030424 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026771
      Expr1030916
      Expr1147506
      Expr2011958
      Expr2030195
    Drives_construct: WBCnstr00036890
    Construct_product: WBCnstr00036890
    Microarray_results (19)
    Expression_cluster (133)
    Interaction (62)
  Map_info: Map: II Position: 3.12352 Error: 8.2e-05
    Positive: Positive_clone: D2089 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00011400
    WBPaper00011648
    WBPaper00018600
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection from [Apicella AJ, Bazzicalupo P]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene