WormBase Tree Display for Gene: WBGene00006986
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WBGene00006986 | SMap | S_parent | Sequence | Y75B8A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | zip-1 | Person_evidence | WBPerson460 | |||||
Sequence_name | Y75B8A.35 | ||||||||
Molecular_name | Y75B8A.35a | ||||||||
Y75B8A.35a.1 | |||||||||
CE24668 | |||||||||
Y75B8A.35b | |||||||||
CE23046 | |||||||||
Y75B8A.35c | |||||||||
CE48493 | |||||||||
Y75B8A.35a.2 | |||||||||
Y75B8A.35b.1 | |||||||||
Y75B8A.35b.2 | |||||||||
Y75B8A.35b.3 | |||||||||
Y75B8A.35c.1 | |||||||||
Other_name | CELE_Y75B8A.35 | Accession_evidence | NDB | BX284603 | |||||
Public_name | zip-1 | ||||||||
DB_info | Database | AceView | gene | 3N433 | |||||
WormQTL | gene | WBGene00006986 | |||||||
WormFlux | gene | WBGene00006986 | |||||||
NDB | locus_tag | CELE_Y75B8A.35 | |||||||
NCBI | gene | 176656 | |||||||
RefSeq | protein | NM_001306678.3 | |||||||
NM_001383010.2 | |||||||||
NM_067201.7 | |||||||||
TREEFAM | TREEFAM_ID | TF343482 | |||||||
TrEMBL | UniProtAcc | Q9U1S5 | |||||||
S6FWP2 | |||||||||
G5EE45 | |||||||||
UniProt_GCRP | UniProtAcc | Q9U1S5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | zip | ||||||||
Allele (377) | |||||||||
Possibly_affected_by | WBVar02157852 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00015394 | ||||||||
Ortholog (20) | |||||||||
Paralog (2) | |||||||||
Structured_description | Concise_description | zip-1 encodes a protein with weak similarity to basic-leucine zipper-type transcription factors; ZIP-1 was identified in a screen for proteins able to bind a pharyngeal muscle-specific enhancer in the promoter of myo-2, which encodes a pharyngeal muscle-specific myosin; as loss of ZIP-1 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, ZIP-1 may function redundantly in pharyngeal muscle specification. | Paper_evidence | WBPaper00005395 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 26 Jan 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA binding activity. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y75B8A.35a | |||||||
Y75B8A.35b | |||||||||
Y75B8A.35c | |||||||||
Corresponding_transcript | Y75B8A.35a.1 | ||||||||
Y75B8A.35a.2 | |||||||||
Y75B8A.35b.1 | |||||||||
Y75B8A.35b.2 | |||||||||
Y75B8A.35b.3 | |||||||||
Y75B8A.35c.1 | |||||||||
Other_sequence | AF160492 | ||||||||
FG581815.1 | |||||||||
SR01239 | |||||||||
Associated_feature | WBsf645658 | ||||||||
WBsf994617 | |||||||||
WBsf994618 | |||||||||
WBsf994619 | |||||||||
WBsf1016177 | |||||||||
WBsf1016178 | |||||||||
WBsf1016179 | |||||||||
WBsf225898 | |||||||||
WBsf225899 | |||||||||
Transcription_factor | WBTranscriptionFactor000222 | ||||||||
Experimental_info | RNAi_result | WBRNAi00058469 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00117229 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037851 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006899 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058463 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058468 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr16097 | ||||||||
Expr1023548 | |||||||||
Expr1032987 | |||||||||
Expr1161882 | |||||||||
Expr2018155 | |||||||||
Expr2036292 | |||||||||
Microarray_results (29) | |||||||||
Expression_cluster (127) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | III | Position | 16.4405 | Error | 0.091442 | |||
Positive | Positive_clone | Y75B8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
zip-1 | |||||||||
Mapping_data | Multi_point | 4798 | |||||||
5018 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005395 | ||||||||
WBPaper00023210 | |||||||||
WBPaper00027309 | |||||||||
WBPaper00057437 | |||||||||
WBPaper00060662 | |||||||||
WBPaper00062345 | |||||||||
WBPaper00062737 | |||||||||
WBPaper00062920 | |||||||||
WBPaper00064440 | |||||||||
WBPaper00064532 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |