WormBase Tree Display for Gene: WBGene00000224
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WBGene00000224 | Evidence | Author_evidence | Veljkovic E | ||||||
---|---|---|---|---|---|---|---|---|---|
Verrey F | |||||||||
From_analysis | |||||||||
SMap | S_parent | Sequence | F26D10 | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | atgp-1 | |||||||
Sequence_name | F26D10.9 | ||||||||
Molecular_name | F26D10.9a | ||||||||
F26D10.9a.1 | |||||||||
CE32183 | |||||||||
F26D10.9b | |||||||||
CE41226 | |||||||||
F26D10.9b.1 | |||||||||
Other_name | atg-1 | ||||||||
tag-95 | CGC_data_submission | ||||||||
CELE_F26D10.9 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | atgp-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 28 Feb 2008 11:15:59 | WBPerson2970 | Name_change | CGC_name | atgp-1 | ||||
Other_name | atg-1 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | atgp | ||||||||
Allele (151) | |||||||||
Strain | WBStrain00035583 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00097759 | ||||||||
00097760 | |||||||||
00101832 | |||||||||
Ortholog (61) | |||||||||
Paralog (3) | |||||||||
Structured_description | Concise_description | atgp-1 encodes a predicted amino acid transporter glycoprotein subunit; when co-expressed in Xenopus oocytes with the AAT-1 or AAT-3 catalytic subunit, ATGP-1 is not able to facilitate amino acid uptake, even though ATGP-1 is able to covalently associate with AAT-1 or AAT-3 in the Xenopus expression system; however, when co-expressed with AAT-9, ATGP-1 is able to enhance the activity of this catalytic subunit; when expressed alone or with AAT-3, ATGP-1 localizes to the cell surface; when co-expressed with AAT-1, ATGP-1 localizes intracellularly. | Paper_evidence | WBPaper00006408 | |||||
WBPaper00024381 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 03 Mar 2006 00:00:00 | ||||||||
Automated_description | Predicted to be involved in carbohydrate metabolic process. Located in plasma membrane. Human ortholog(s) of this gene implicated in cystinuria. Is an ortholog of human SLC3A1 (solute carrier family 3 member 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9266 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11025) | ||||
Molecular_info | Corresponding_CDS | F26D10.9a | |||||||
F26D10.9b | |||||||||
Corresponding_CDS_history | F26D10.9:wp88 | ||||||||
Corresponding_transcript | F26D10.9a.1 | ||||||||
F26D10.9b.1 | |||||||||
Other_sequence (93) | |||||||||
Associated_feature | WBsf646605 | ||||||||
WBsf660980 | |||||||||
WBsf660981 | |||||||||
WBsf717214 | |||||||||
WBsf981871 | |||||||||
WBsf229622 | |||||||||
Experimental_info | RNAi_result | WBRNAi00031434 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013927 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00045611 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1027197 | ||||||||
Expr1030141 | |||||||||
Expr1149524 | |||||||||
Expr2009498 | |||||||||
Expr2027735 | |||||||||
Drives_construct | WBCnstr00037993 | ||||||||
Construct_product | WBCnstr00037993 | ||||||||
Antibody | WBAntibody00000719 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (181) | |||||||||
Interaction (33) | |||||||||
Map_info | Map | IV | Position | 16.2882 | Error | 0.004481 | |||
Positive | Positive_clone | F26D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4164 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00006408 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00039044 | |||||||||
WBPaper00039099 | |||||||||
WBPaper00039519 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00061547 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |