WormBase Tree Display for Gene: WBGene00022505
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WBGene00022505 | SMap | S_parent | Sequence | ZC21 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | idpp-15 | Person_evidence | WBPerson1820 | |||
Sequence_name | ZC21.3 | ||||||
Molecular_name (15) | |||||||
Other_name | CELE_ZC21.3 | Accession_evidence | NDB | BX284603 | |||
Public_name | idpp-15 | ||||||
DB_info | Database | AceView | gene | 3J617 | |||
WormQTL | gene | WBGene00022505 | |||||
WormFlux | gene | WBGene00022505 | |||||
NDB | locus_tag | CELE_ZC21.3 | |||||
NCBI | gene | 191053 | |||||
RefSeq | protein | NM_001379833.1 | |||||
NM_001306746.3 | |||||||
NM_001306747.2 | |||||||
NM_001306745.3 | |||||||
NM_001379834.1 | |||||||
SwissProt | UniProtAcc | P34587 | |||||
TREEFAM | TREEFAM_ID | TF343101 | |||||
TrEMBL | UniProtAcc | U4PBK5 | |||||
G4RUC0 | |||||||
U4PBY4 | |||||||
U4PME0 | |||||||
UniProt_GCRP | UniProtAcc | P34587 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | idpp | ||||||
Allele (36) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (18) | |||||||
Structured_description | Concise_description | ZC21.3 encodes a protein predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||
WBPaper00012788 | |||||||
WBPaper00012830 | |||||||
WBPaper00012882 | |||||||
WBPaper00012897 | |||||||
WBPaper00013003 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABplppppaa; ABprppppaa; AUA; accessory cell; and head mesodermal cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq; tiling array; and microarray studies. Is affected by nineteen chemicals including Ethanol; 1-methylnicotinamide; and nicotinic acid based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZC21.3a | |||||
ZC21.3b | |||||||
ZC21.3c | |||||||
ZC21.3d | |||||||
ZC21.3e | |||||||
Corresponding_CDS_history | ZC21.3:wp101 | ||||||
ZC21.3:wp186 | |||||||
ZC21.3a:wp275 | |||||||
ZC21.3b:wp275 | |||||||
Corresponding_transcript | ZC21.3a.1 | ||||||
ZC21.3b.1 | |||||||
ZC21.3c.1 | |||||||
ZC21.3d.1 | |||||||
ZC21.3e.1 | |||||||
Other_sequence (11) | |||||||
Associated_feature | WBsf645420 | ||||||
WBsf993388 | |||||||
WBsf1015448 | |||||||
Experimental_info | RNAi_result | WBRNAi00058795 | Inferred_automatically | RNAi_primary | |||
WBRNAi00021619 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005225 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037987 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr67 | ||||||
Expr1026616 | |||||||
Expr1028105 | |||||||
Expr1039948 | |||||||
Expr1040236 | |||||||
Expr1162218 | |||||||
Expr1162221 | |||||||
Expr2008576 | |||||||
Expr2026815 | |||||||
Drives_construct (2) | |||||||
Construct_product | WBCnstr00023615 | ||||||
WBCnstr00024195 | |||||||
Microarray_results | SMD_ZC21.3 | ||||||
189769_at | |||||||
A_12_P105691 | |||||||
A_12_P145425 | |||||||
A_12_P145426 | |||||||
A_12_P145427 | |||||||
A_12_P145428 | |||||||
A_12_P177659 | |||||||
Aff_ZC21.3 | |||||||
GPL13394_WBGene00044351 | |||||||
GPL13914_ZC21.9 | |||||||
GPL14144_ZC21.3b_1104-1163_0.942_5_B | |||||||
GPL14144_ZC21.3b_1224-1283_0.975_1_A | |||||||
GPL14144_ZC21.3b_770-829_0.929_6_C | |||||||
GPL14144_ZC21.9_190-249_0.947_2_A | |||||||
GPL14144_ZC21.9_265-324_0.907_13_B | |||||||
GPL14144_ZC21.9_57-116_0.921_8_C | |||||||
GPL19516_CGZ0013372 | |||||||
GPL19516_CGZ0055651 | |||||||
GPL19516_CGZ0055652 | |||||||
GPL19516_CGZ0055653 | |||||||
GPL19516_CGZ0055654 | |||||||
GPL19516_CGZ0055655 | |||||||
GPL21109_Cat_ZC21.3a | |||||||
GPL21109_ZC21.3a | |||||||
GPL21109_ZC21.3c | |||||||
GPL3518_CE25660 | |||||||
GPL8304_CE_WBGene00022505_A | |||||||
GPL8304_CE_WBGene00022505_B | |||||||
GPL8304_CE_WBGene00044351_A | |||||||
GPL8304_CE_WBGene00044351_B | |||||||
GPL8673_ZC21_3P00390 | |||||||
GPL8673_ZC21_3P00567 | |||||||
GPL8673_ZC21_3P00864 | |||||||
GPL8673_ZC21_9P00249 | |||||||
GPL8673_ZC21_9P00560 | |||||||
GPL9450_ZC21.3 | |||||||
cea2.p.81273 | |||||||
Expression_cluster (215) | |||||||
Map_info | Map | III | Position | -0.2542 | |||
Positive | Positive_clone | ZC21 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00064648 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |