WormBase Tree Display for Gene: WBGene00020437
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| WBGene00020437 | SMap | S_parent | Sequence | T12A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | stt-3 | Person_evidence | WBPerson610 | |||||
| Sequence_name | T12A2.2 | ||||||||
| Molecular_name | T12A2.2 | ||||||||
| T12A2.2.1 | |||||||||
| CE01395 | |||||||||
| T12A2.2.2 | |||||||||
| Other_name | CELE_T12A2.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | stt-3 | ||||||||
| DB_info | Database (14) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 Feb 2012 10:14:29 | WBPerson2970 | Name_change | CGC_name | stt-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stt | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00051209 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00004449 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ix. Is an ortholog of human STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080573 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30611) | ||||
| Molecular_info (4) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1013569 | ||||||||
| Expr1038913 | |||||||||
| Expr1156752 | |||||||||
| Expr2017099 | |||||||||
| Expr2035235 | |||||||||
| Drives_construct | WBCnstr00025142 | ||||||||
| Construct_product | WBCnstr00025142 | ||||||||
| Regulate_expr_cluster | WBPaper00059373:stt-3(RNAi)_downregulated | ||||||||
| WBPaper00059373:stt-3(RNAi)_upregulated | |||||||||
| Microarray_results | SMD_T12A2.2 | ||||||||
| 187557_s_at | |||||||||
| A_12_P108200 | |||||||||
| A_12_P131430 | |||||||||
| A_12_P131431 | |||||||||
| A_12_P171674 | |||||||||
| Aff_T12A2.2 | |||||||||
| GPL13394_WBGene00020437 | |||||||||
| GPL13914_T12A2.2 | |||||||||
| GPL14144_T12A2.2_1986-2045_0.938_4_C | |||||||||
| GPL14144_T12A2.2_2042-2101_0.955_1_A | |||||||||
| GPL14144_T12A2.2_2122-2181_0.949_2_B | |||||||||
| GPL19516_CGZ0012697 | |||||||||
| GPL19516_CGZ0034762 | |||||||||
| GPL19516_CGZ0034763 | |||||||||
| GPL19516_CGZ0034764 | |||||||||
| GPL21109_T12A2.2.1 | |||||||||
| GPL3518_CE01395 | |||||||||
| GPL8304_CE_WBGene00020437_A | |||||||||
| GPL8304_CE_WBGene00020437_B | |||||||||
| GPL8673_T12A2_2P00839 | |||||||||
| GPL8673_T12A2_2P01167 | |||||||||
| GPL8673_T12A2_2P01740 | |||||||||
| GPL9450_T12A2.2 | |||||||||
| cea2.c.22788 | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (110) | |||||||||
| Map_info | Map | III | Position | -1.40787 | |||||
| Positive | Positive_clone | T12A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029024 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040883 | |||||||||
| WBPaper00045573 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055674 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
