WormBase Tree Display for Gene: WBGene00013263
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WBGene00013263 | SMap | S_parent | Sequence | Y57A10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 2M531 | |||||
WormQTL | gene | WBGene00013263 | |||||||
WormFlux | gene | WBGene00013263 | |||||||
NDB | locus_tag | CELE_Y57A10A.23 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013263|UniProtKB=Q9NA78 | |||||||
family | PTHR15337 | ||||||||
NCBI | gene | 174863 | |||||||
RefSeq | protein | NM_001383970.2 | |||||||
TREEFAM | TREEFAM_ID | TF321449 | |||||||
TrEMBL | UniProtAcc | Q9NA78 | |||||||
UniProt_GCRP | UniProtAcc | Q9NA78 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Aug 2017 12:58:54 | WBPerson2970 | Name_change | CGC_name | txdc-12.1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | txdc | ||||||||
Allele (61) | |||||||||
Strain | WBStrain00002731 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00095844 | ||||||||
Ortholog (40) | |||||||||
Paralog | WBGene00018656 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable oxidoreductase activity. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in breast cancer; pancreatic ductal adenocarcinoma; and pancreatic ductal carcinoma. Is an ortholog of human TXNDC12 (thioredoxin domain containing 12). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:3587 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:328) | ||||
DOID:3498 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:328) | ||||||
DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:328) | ||||||
Molecular_info | Corresponding_CDS | Y57A10A.23 | |||||||
Corresponding_transcript | Y57A10A.23.1 | ||||||||
Other_sequence (86) | |||||||||
Associated_feature | WBsf222252 | ||||||||
Experimental_info | RNAi_result | WBRNAi00057625 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037562 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021100 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7070 | ||||||||
Expr1022917 | |||||||||
Expr1035918 | |||||||||
Expr1161035 | |||||||||
Expr2008013 | |||||||||
Expr2026254 | |||||||||
Drives_construct | WBCnstr00003261 | ||||||||
Microarray_results | SMD_Y57A10A.U | ||||||||
187073_at | |||||||||
A_12_P104535 | |||||||||
Aff_Y57A10A.W | |||||||||
GPL13394_WBGene00013263 | |||||||||
GPL13914_Y57A10A.23 | |||||||||
GPL14144_Y57A10A.23_117-176_0.941_9_C | |||||||||
GPL14144_Y57A10A.23_254-313_0.943_7_B | |||||||||
GPL14144_Y57A10A.23_417-476_0.958_1_A | |||||||||
GPL19516_CGZ0049493 | |||||||||
GPL21109_Y57A10A.23 | |||||||||
GPL3518_CE22626 | |||||||||
GPL8304_CE_WBGene00013263_A | |||||||||
GPL8304_CE_WBGene00013263_B | |||||||||
GPL8304_CE_WBGene00013263_C | |||||||||
GPL8673_Y57A10A_23P00010 | |||||||||
GPL8673_Y57A10A_23P00413 | |||||||||
GPL8673_Y57A10A_23P00488 | |||||||||
GPL9450_Y57A10A.23 | |||||||||
cea2.c.15582 | |||||||||
Expression_cluster (304) | |||||||||
Interaction | WBInteraction000031662 | ||||||||
WBInteraction000551993 | |||||||||
WBInteraction000562077 | |||||||||
WBInteraction000568061 | |||||||||
WBInteraction000568465 | |||||||||
WBInteraction000570837 | |||||||||
WBInteraction000571062 | |||||||||
WBInteraction000582211 | |||||||||
WBInteraction000585637 | |||||||||
Map_info | Map | II | Position | 7.28631 | |||||
Positive | Positive_clone | Y57A10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00061547 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |