WormBase Tree Display for Gene: WBGene00009580

WBGene00009580 SMap: S_parent: Sequence: F40F9
  Identity: Version: 2
    Name: CGC_name: xbx-6 Person_evidence: WBPerson641
            WBPerson3089
      Sequence_name: F40F9.1
      Molecular_name: F40F9.1a
        F40F9.1a.1
        CE31343
        F40F9.1b
        CE31344
        F40F9.1a.2
        F40F9.1b.1
        F40F9.1b.2
        F40F9.1b.3
        F40F9.1c
      Other_name: CELE_F40F9.1 Accession_evidence: NDB BX284605
      Public_name: xbx-6
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Apr 2005 11:05:24 WBPerson2970 Name_change: CGC_name: xbx-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: xbx
    Allele (75)
    Strain: WBStrain00001364
      WBStrain00029250
      WBStrain00031668
    RNASeq_FPKM (74)
    GO_annotation (6)
    Ortholog (48)
    Paralog: WBGene00006470 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006479 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019664 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021537 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Expressed in neurons; pharyngeal muscle cell; tail; and ventral nerve cord. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (2)
    Corresponding_CDS_history: F40F9.1:wp82
    Corresponding_transcript: F40F9.1c
      F40F9.1a.1
      F40F9.1a.2
      F40F9.1b.1
      F40F9.1b.2
      F40F9.1b.3
    Other_sequence (53)
    Associated_feature: WBsf232286
      WBsf232287
      WBsf232288
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr3290
      Expr3484
      Expr6014
      Expr10142
      Expr1023948
      Expr1034192
      Expr1150748
      Expr2018094
      Expr2036232
    Drives_construct: WBCnstr00002254
      WBCnstr00011287
      WBCnstr00011417
    Microarray_results: SMD_F40F9.1
      SMD_F40F9.2
      193650_at
      194253_x_at
      A_12_P106191
      A_12_P118272
      Aff_F40F9.1
      GPL13394_WBGene00009580
      GPL13914_F40F9.1
      GPL14144_F40F9.1a_193-252_0.886_8_C
      GPL14144_F40F9.1a_414-473_0.870_15_B
      GPL14144_F40F9.1a_761-820_0.936_1_A
      GPL19516_CGZ0020851
      GPL19516_CGZ0020852
      GPL19516_CGZ0020853
      GPL19516_CGZ0020854
      GPL19516_CGZ0020855
      GPL19516_CGZ0020856
      GPL19516_CGZ0020857
      GPL21109_F40F9.1a.1
      GPL21109_F40F9.1c
      GPL3518_CE31344
      GPL8304_CE_WBGene00009580_A
      GPL8304_CE_WBGene00009580_B
      GPL8673_F40F9_1aP00272
      GPL8673_F40F9_1aP00456
      GPL8673_F40F9_1aP00533
      GPL8673_F40F9_1bP00272
      GPL8673_F40F9_1bP00456
      GPL8673_F40F9_1bP00533
      GPL9450_F40F9.1a
      GPL9450_F40F9.1b
      cea2.d.24778
      cea2.d.24780
      cea2.d.24791
    Expression_cluster (113)
    Interaction (27)
  Map_info: Map: V Position: 2.08834 Error: 0.005872
    Positive: Positive_clone: F40F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5142
    Pseudo_map_position
  Reference: WBPaper00025051
    WBPaper00032078
    WBPaper00038491
    WBPaper00055090
    WBPaper00059097
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene