WormBase Tree Display for Gene: WBGene00006986
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WBGene00006986 | SMap | S_parent | Sequence | Y75B8A | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | zip | ||||||
Allele (377) | |||||||
Possibly_affected_by | WBVar02157852 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00015394 | ||||||
Ortholog (20) | |||||||
Paralog | WBGene00013562 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00018761 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Structured_description | Concise_description | zip-1 encodes a protein with weak similarity to basic-leucine zipper-type transcription factors; ZIP-1 was identified in a screen for proteins able to bind a pharyngeal muscle-specific enhancer in the promoter of myo-2, which encodes a pharyngeal muscle-specific myosin; as loss of ZIP-1 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, ZIP-1 may function redundantly in pharyngeal muscle specification. | Paper_evidence | WBPaper00005395 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 26 Jan 2006 00:00:00 | ||||||
Automated_description | Predicted to enable DNA binding activity. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y75B8A.35a | |||||
Y75B8A.35b | |||||||
Y75B8A.35c | |||||||
Corresponding_transcript | Y75B8A.35a.1 | ||||||
Y75B8A.35a.2 | |||||||
Y75B8A.35b.1 | |||||||
Y75B8A.35b.2 | |||||||
Y75B8A.35b.3 | |||||||
Y75B8A.35c.1 | |||||||
Other_sequence | AF160492 | ||||||
FG581815.1 | |||||||
SR01239 | |||||||
Associated_feature | WBsf645658 | ||||||
WBsf994617 | |||||||
WBsf994618 | |||||||
WBsf994619 | |||||||
WBsf1016177 | |||||||
WBsf1016178 | |||||||
WBsf1016179 | |||||||
WBsf225898 | |||||||
WBsf225899 | |||||||
Transcription_factor | WBTranscriptionFactor000222 | ||||||
Experimental_info | RNAi_result | WBRNAi00058469 | Inferred_automatically | RNAi_primary | |||
WBRNAi00117229 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037851 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006899 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00058463 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00058468 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr16097 | ||||||
Expr1023548 | |||||||
Expr1032987 | |||||||
Expr1161882 | |||||||
Expr2018155 | |||||||
Expr2036292 | |||||||
Microarray_results | SMD_Y75B8A.35 | ||||||
173457_s_at | |||||||
A_12_P102681 | |||||||
Aff_Y75B8A.MM | |||||||
GPL13394_WBGene00006986 | |||||||
GPL13914_Y75B8A.35 | |||||||
GPL14144_Y75B8A.35a_1259-1318_0.928_11_A | |||||||
GPL14144_Y75B8A.35a_878-937_0.418_274_C | |||||||
GPL14144_Y75B8A.35a_991-1050_0.940_5_B | |||||||
GPL19516_CGZ0054784 | |||||||
GPL19516_CGZ0054785 | |||||||
GPL19516_CGZ0054786 | |||||||
GPL19516_CGZ0054787 | |||||||
GPL21109_Y75B8A.35a.1 | |||||||
GPL3518_CE23046 | |||||||
GPL3518_CE24668 | |||||||
GPL8304_CE_WBGene00006986_A | |||||||
GPL8304_CE_WBGene00006986_B | |||||||
GPL8673_Y75B8A_35aP00071 | |||||||
GPL8673_Y75B8A_35aP00075 | |||||||
GPL8673_Y75B8A_35aP00080 | |||||||
GPL8673_Y75B8A_35bP00053 | |||||||
GPL8673_Y75B8A_35bP00564 | |||||||
GPL8673_Y75B8A_35bP00932 | |||||||
GPL9450_Y75B8A.35a | |||||||
GPL9450_Y75B8A.35b | |||||||
cea2.d.47118 | |||||||
cea2.d.47132 | |||||||
cea2.p.80519 | |||||||
Expression_cluster (127) | |||||||
Interaction (11) | |||||||
Map_info | Map | III | Position | 16.4405 | Error | 0.091442 | |
Positive | Positive_clone | Y75B8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
zip-1 | |||||||
Mapping_data | Multi_point | 4798 | |||||
5018 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00005395 | ||||||
WBPaper00023210 | |||||||
WBPaper00027309 | |||||||
WBPaper00057437 | |||||||
WBPaper00060662 | |||||||
WBPaper00062345 | |||||||
WBPaper00062737 | |||||||
WBPaper00062920 | |||||||
WBPaper00064440 | |||||||
WBPaper00064532 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |