WormBase Tree Display for Gene: WBGene00006503
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WBGene00006503 | SMap | S_parent | Sequence | W06D4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | snx-3 | Person_evidence | WBPerson4055 | |||||
Sequence_name | W06D4.5 | ||||||||
Molecular_name | W06D4.5 | ||||||||
W06D4.5.1 | |||||||||
CE16547 | |||||||||
Other_name | tag-157 | Person_evidence | WBPerson201 | ||||||
CELE_W06D4.5 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | snx-3 | ||||||||
DB_info | Database | AceView | gene | 1J640 | |||||
WormQTL | gene | WBGene00006503 | |||||||
WormFlux | gene | WBGene00006503 | |||||||
NDB | locus_tag | CELE_W06D4.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006503|UniProtKB=Q9XW41 | |||||||
family | PTHR45963 | ||||||||
NCBI | gene | 189240 | |||||||
RefSeq | protein | NM_060036.4 | |||||||
TREEFAM | TREEFAM_ID | TF314980 | |||||||
TrEMBL | UniProtAcc | Q9XW41 | |||||||
UniProt_GCRP | UniProtAcc | Q9XW41 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 20 Jul 2007 11:50:19 | WBPerson2970 | Name_change | CGC_name | snx-3 | ||||
Other_name | tag-157 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snx | ||||||||
Allele (20) | |||||||||
Strain | WBStrain00035848 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOP1528 | ||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00003086 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00004927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00013354 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endocytic recycling and late endosome to Golgi transport. Located in endosome. Expressed in several structures, including pharynx and rectal epithelial cell. Is an ortholog of human SNX12 (sorting nexin 12) and SNX3 (sorting nexin 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | W06D4.5 | |||||||
Corresponding_transcript | W06D4.5.1 | ||||||||
Other_sequence (64) | |||||||||
Associated_feature | WBsf649439 | ||||||||
WBsf655252 | |||||||||
WBsf984566 | |||||||||
WBsf984567 | |||||||||
WBsf220027 | |||||||||
Experimental_info | RNAi_result | WBRNAi00099095 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00097733 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116451 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054888 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036339 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087656 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004442 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9686 | ||||||||
Expr12288 | |||||||||
Expr1020940 | |||||||||
Expr1032663 | |||||||||
Expr1158432 | |||||||||
Expr2015989 | |||||||||
Expr2034224 | |||||||||
Drives_construct | WBCnstr00009251 | ||||||||
WBCnstr00014224 | |||||||||
WBCnstr00020632 | |||||||||
Construct_product | WBCnstr00009251 | ||||||||
WBCnstr00009285 | |||||||||
WBCnstr00009286 | |||||||||
WBCnstr00014224 | |||||||||
Microarray_results | SMD_W06D4.4 | ||||||||
SMD_W06D4.5 | |||||||||
193831_at | |||||||||
A_12_P102527 | |||||||||
Aff_T06D10.C | |||||||||
GPL13394_WBGene00006503 | |||||||||
GPL13914_W06D4.5 | |||||||||
GPL14144_W06D4.5_181-240_0.929_5_C | |||||||||
GPL14144_W06D4.5_235-294_0.939_2_B | |||||||||
GPL14144_W06D4.5_438-497_0.960_1_A | |||||||||
GPL19516_CGZ0038595 | |||||||||
GPL21109_W06D4.5 | |||||||||
GPL3518_CE16547 | |||||||||
GPL8304_CE_WBGene00006503_A | |||||||||
GPL8304_CE_WBGene00006503_C | |||||||||
GPL8673_W06D4_5P00128 | |||||||||
GPL8673_W06D4_5P00219 | |||||||||
GPL8673_W06D4_5P00340 | |||||||||
GPL9450_W06D4.5 | |||||||||
cea2.i.05368 | |||||||||
Expression_cluster (94) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | I | Position | 3.46031 | Error | 0.0066 | |||
Positive | Positive_clone | W06D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4139 | |||||||
Pseudo_map_position | |||||||||
Reference (25) | |||||||||
Remark (2) | |||||||||
Method | Gene |