WormBase Tree Display for Gene: WBGene00004810
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WBGene00004810 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y60A3A | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-4 | Person_evidence | WBPerson322 | |||||
Sequence_name | Y60A3A.18 | ||||||||
Molecular_name | Y60A3A.18 | ||||||||
Y60A3A.18.1 | |||||||||
CE24523 | |||||||||
Other_name | CELE_Y60A3A.18 | Accession_evidence | NDB | BX284605 | |||||
Public_name | skr-4 | ||||||||
DB_info | Database | AceView | gene | 5U393 | |||||
WormQTL | gene | WBGene00004810 | |||||||
WormFlux | gene | WBGene00004810 | |||||||
NDB | locus_tag | CELE_Y60A3A.18 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004810|UniProtKB=Q9U1Y9 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 191762 | |||||||
RefSeq | protein | NM_075456.7 | |||||||
TREEFAM | TREEFAM_ID | TF354233 | |||||||
TrEMBL | UniProtAcc | Q9U1Y9 | |||||||
UniProt_GCRP | UniProtAcc | Q9U1Y9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele (56) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00093591 | ||||||||
00093592 | |||||||||
00093593 | |||||||||
00093594 | |||||||||
00093595 | |||||||||
00107989 | |||||||||
Ortholog (105) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | The skr-4 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-4(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | |||||
WBPaper00005129 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y60A3A.18 | |||||||
Corresponding_transcript | Y60A3A.18.1 | ||||||||
Associated_feature (2) | |||||||||
Experimental_info | RNAi_result | WBRNAi00069084 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00086783 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00057808 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086782 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086801 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069085 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2440 | ||||||||
Expr1161240 | |||||||||
Expr2015852 | |||||||||
Expr2034085 | |||||||||
Drives_construct | WBCnstr00010831 | ||||||||
Construct_product | WBCnstr00010831 | ||||||||
Microarray_results | 188228_at | ||||||||
188229_s_at | |||||||||
A_12_P110675 | |||||||||
Aff_Y60A3.F | |||||||||
GPL19516_CGZ0051432 | |||||||||
GPL21109_Y60A3A.18 | |||||||||
GPL3518_CE24523 | |||||||||
GPL8304_CE_WBGene00004810_A | |||||||||
GPL8304_CE_WBGene00004810_B | |||||||||
GPL8673_Y60A3A_18P00061 | |||||||||
GPL8673_Y60A3A_18P00144 | |||||||||
GPL8673_Y60A3A_18P00269 | |||||||||
GPL9450_Y60A3A.18 | |||||||||
cea2.d.45986 | |||||||||
cea2.d.45990 | |||||||||
Expression_cluster (246) | |||||||||
Interaction (8) | |||||||||
Map_info (3) | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00059442 | |||||||||
WBPaper00061319 | |||||||||
WBPaper00062289 | |||||||||
WBPaper00062345 | |||||||||
WBPaper00065331 | |||||||||
WBPaper00065984 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |