WormBase Tree Display for Gene: WBGene00004269
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WBGene00004269 | SMap | S_parent | Sequence | F59B2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | rab-6.1 | Person_evidence | WBPerson451 | |||||
Sequence_name | F59B2.7 | ||||||||
Molecular_name | F59B2.7 | ||||||||
F59B2.7.1 | |||||||||
CE00234 | |||||||||
Other_name | P34213 | Paper_evidence | WBPaper00041995 | ||||||
CELE_F59B2.7 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | rab-6.1 | ||||||||
DB_info | Database | AceView | gene | 3K94 | |||||
WormQTL | gene | WBGene00004269 | |||||||
WormFlux | gene | WBGene00004269 | |||||||
NDB | locus_tag | CELE_F59B2.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004269|UniProtKB=P34213 | |||||||
family | PTHR24073 | ||||||||
NCBI | gene | 176275 | |||||||
RefSeq | protein | NM_066592.7 | |||||||
SwissProt | UniProtAcc | P34213 | |||||||
TREEFAM | TREEFAM_ID | TF300803 | |||||||
UniProt_GCRP | UniProtAcc | P34213 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rab | ||||||||
Allele (22) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (29) | |||||||||
Ortholog (43) | |||||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | rab-6.1 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila and mammalian Rab6 GTPases; by homology, RAB-6.1 is predicted to function in the regulation of intracellular membrane trafficking; RNAi experiments indicate that rab-6.1 is required redundantly with rab-6.2 for normal embryonic development and reproduction; a RAB-6.1::GFP fusion protein localizes to the Golgi cisternae; RAB-6.1 physically interacts with VPS-52, a GARP (Golgi associated retrograde protein) complex subunit, in vivo. | Paper_evidence | WBPaper00030808 | |||||
WBPaper00038455 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 13 Jan 2012 00:00:00 | ||||||||
Automated_description | Predicted to enable GTPase activity. Involved in cortical granule exocytosis and cuticle development. Located in Golgi cisterna and cortical granule. Expressed in several structures, including RIG; command interneuron; gonad; intestine; and vulva. Is an ortholog of human RAB6A (RAB6A, member RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F59B2.7 | |||||||
Corresponding_transcript | F59B2.7.1 | ||||||||
Other_sequence | EL888321.1 | ||||||||
XIC03786_1 | |||||||||
Tcir_isotig14388 | |||||||||
JI172655.1 | |||||||||
PPC17073_1 | |||||||||
CBC04025_1 | |||||||||
XI03944 | |||||||||
Associated_feature | WBsf227222 | ||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr9 | ||||||||
Expr10203 | |||||||||
Expr12748 | |||||||||
Expr1017645 | |||||||||
Expr1032108 | |||||||||
Expr1152894 | |||||||||
Expr2015229 | |||||||||
Expr2033463 | |||||||||
Drives_construct | WBCnstr00015513 | ||||||||
WBCnstr00022749 | |||||||||
WBCnstr00035598 | |||||||||
Construct_product | WBCnstr00015122 | ||||||||
WBCnstr00015123 | |||||||||
WBCnstr00015513 | |||||||||
WBCnstr00022747 | |||||||||
WBCnstr00022748 | |||||||||
WBCnstr00022749 | |||||||||
WBCnstr00035598 | |||||||||
Microarray_results | SMD_F59B2.7 | ||||||||
175373_s_at | |||||||||
190167_s_at | |||||||||
190194_at | |||||||||
A_12_P118285 | |||||||||
Aff_F59B2.7 | |||||||||
GPL13394_WBGene00004269 | |||||||||
GPL13914_F59B2.7 | |||||||||
GPL14144_F59B2.7_298-357_0.934_2_C | |||||||||
GPL14144_F59B2.7_411-470_0.946_1_B | |||||||||
GPL14144_F59B2.7_577-636_0.930_3_A | |||||||||
GPL19516_CGZ0012942 | |||||||||
GPL19516_CGZ0025528 | |||||||||
GPL21109_F59B2.7 | |||||||||
GPL3518_CE00234 | |||||||||
GPL8304_CE_WBGene00004269_A | |||||||||
GPL8304_CE_WBGene00004269_C | |||||||||
GPL8673_F59B2_7P00223 | |||||||||
GPL8673_F59B2_7P00314 | |||||||||
GPL8673_F59B2_7P00531 | |||||||||
GPL9450_F59B2.7 | |||||||||
cea2.c.20476 | |||||||||
Expression_cluster (126) | |||||||||
Interaction (102) | |||||||||
Map_info (4) | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |