WormBase Tree Display for Gene: WBGene00000888
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WBGene00000888 | SMap | S_parent | Sequence | C34D4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | cyn-12 | Person_evidence | WBPerson466 | |||
Sequence_name | C34D4.12 | ||||||
Molecular_name | C34D4.12a | ||||||
C34D4.12a.1 | |||||||
CE17506 | |||||||
C34D4.12b | |||||||
CE49222 | |||||||
C34D4.12b.1 | |||||||
Other_name | cyp-12 | Person_evidence | WBPerson466 | ||||
CELE_C34D4.12 | Accession_evidence | NDB | BX284604 | ||||
Public_name | cyn-12 | ||||||
DB_info | Database (12) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cyn | ||||||
Allele (15) | |||||||
Legacy_information | [Page AP] C34D4.12. No mutants known. Transpliced to SL1 and SL2 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00061263 | ||||||
00061264 | |||||||
00061265 | |||||||
00061266 | |||||||
00061267 | |||||||
00061268 | |||||||
00061269 | |||||||
00061270 | |||||||
00107948 | |||||||
00107949 | |||||||
Ortholog (37) | |||||||
Paralog (18) | |||||||
Structured_description | Concise_description | cyn-12 encodes a member of the cyclophilin family that is related to human PPIL1 (CGI-124); based upon its sequence similarity, CYN-12 is predicted to be a cytoplasmic protein potentially involved in a wide range of signal transduction pathways. | Paper_evidence | WBPaper00026884 | |||
Curator_confirmed | WBPerson48 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 20 Mar 2007 00:00:00 | ||||||
Automated_description | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 14. Is an ortholog of human PPIL1 (peptidylprolyl isomerase like 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0112325 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9260) | ||
Molecular_info | Corresponding_CDS | C34D4.12a | |||||
C34D4.12b | |||||||
Corresponding_transcript | C34D4.12a.1 | ||||||
C34D4.12b.1 | |||||||
Other_sequence (54) | |||||||
Associated_feature | WBsf651890 | ||||||
WBsf230223 | |||||||
Experimental_info | RNAi_result (12) | ||||||
Expr_pattern | Expr1011395 | ||||||
Expr1030553 | |||||||
Expr1145887 | |||||||
Expr2010664 | |||||||
Expr2028904 | |||||||
Drives_construct | WBCnstr00037218 | ||||||
Construct_product | WBCnstr00037218 | ||||||
Microarray_results | SMD_C34D4.12 | ||||||
188362_at | |||||||
A_12_P117517 | |||||||
Aff_C34D4.12 | |||||||
GPL13394_WBGene00000888 | |||||||
GPL13914_C34D4.12 | |||||||
GPL14144_C34D4.12_136-195_0.917_12_C | |||||||
GPL14144_C34D4.12_236-295_0.938_3_B | |||||||
GPL14144_C34D4.12_316-375_0.957_1_A | |||||||
GPL19516_CGZ0007470 | |||||||
GPL21109_C34D4.12 | |||||||
GPL3518_CE17506 | |||||||
GPL8304_CE_WBGene00000888_A | |||||||
GPL8304_CE_WBGene00000888_C | |||||||
GPL8673_C34D4_12P00045 | |||||||
GPL8673_C34D4_12P00250 | |||||||
GPL8673_C34D4_12P00378 | |||||||
GPL9450_C34D4.12 | |||||||
cea2.i.24105 | |||||||
Expression_cluster (110) | |||||||
Interaction (56) | |||||||
Map_info | Map | IV | Position | 3.29058 | Error | 8.3e-05 | |
Positive | Positive_clone | C34D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00026884 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | This gene has been renamed with approval of the CGC (cyp-12->cyn-12) | Person_evidence | WBPerson466 | ||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |