WormBase Tree Display for Gene: WBGene00000419
expand all nodes | collapse all nodes | view schema
| WBGene00000419 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ced-5 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C02F4.1 | ||||||||
| Molecular_name | C02F4.1 | ||||||||
| C02F4.1.1 | |||||||||
| CE24779 | |||||||||
| Other_name | CELE_C02F4.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ced-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ced | ||||||||
| Allele (106) | |||||||||
| Legacy_information | [C.elegansII] n1812 : programmmed cell deaths abnormal, dying cells arrest at highly refractile stage; killer cells fail to engulf target cells; engulfment group B (ced-2,5,10 : suppress vulvaless phenotype of lin-24, lin-33); Mig, hermaphrodite distal tip cells execute extra turns; extensive maternal rescue; no gross phenotype. OA1: n2002.Cloned : 5.6 kb transcript, predicted protein 180 kD, novel.[Ellis et al. 1991; MT; NF; ZB] | ||||||||
| [C.elegansII] n1812 : programmmed cell deaths abnormal, dying cells arrest at highly refractile stage; killer cells fail to engulf target cells; engulfment group B (ced-2,5,10 : suppress vulvaless phenotype of lin-24, lin-33); Mig, hermaphrodite distal tip cells execute extra turns; extensive maternal rescue; no gross phenotype. OA1: n2002.Cloned : 5.6 kb transcript, predicted protein 180 kD, novel. [Ellis et al. 1991; MT; NF; ZB] | |||||||||
| [Wu Y-C, Horvitz HR] Encodes 1781 aa predicted protein with similarity to human protein DOCK180. n1812 is stop at codon 28, n2002, n2691 also nonsense mutations, m2098, n2099 are splice acceptor mutations. n1812/sDf2 resemble n1812/n1812, probable null phenotype. Predicted gene C02F4.1 | |||||||||
| Strain | WBStrain00027132 | ||||||||
| WBStrain00027134 | |||||||||
| WBStrain00027167 | |||||||||
| WBStrain00027174 | |||||||||
| WBStrain00027281 | |||||||||
| WBStrain00027282 | |||||||||
| WBStrain00027293 | |||||||||
| WBStrain00027342 | |||||||||
| WBStrain00031450 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (48) | |||||||||
| Ortholog (59) | |||||||||
| Paralog | WBGene00009065 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00018520 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description (2) | |||||||||
| Disease_info | Potential_model | DOID:0111951 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2988) | ||||
| DOID:1094 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2989) | ||||||
| Molecular_info | Corresponding_CDS | C02F4.1 | |||||||
| Corresponding_transcript | C02F4.1.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf646307 | ||||||||
| WBsf660584 | |||||||||
| WBsf976954 | |||||||||
| WBsf976955 | |||||||||
| WBsf976956 | |||||||||
| WBsf228996 | |||||||||
| WBsf228997 | |||||||||
| WBsf228998 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr8762 | ||||||||
| Expr14253 | |||||||||
| Expr1020545 | |||||||||
| Expr1030235 | |||||||||
| Expr1143552 | |||||||||
| Expr2009849 | |||||||||
| Expr2028089 | |||||||||
| Drives_construct | WBCnstr00005770 | ||||||||
| WBCnstr00037557 | |||||||||
| WBCnstr00040684 | |||||||||
| Construct_product | WBCnstr00014899 | ||||||||
| WBCnstr00037557 | |||||||||
| Microarray_results | SMD_C02F4.1 | ||||||||
| 175635_at | |||||||||
| 191080_s_at | |||||||||
| A_12_P106577 | |||||||||
| A_12_P174677 | |||||||||
| A_12_P174678 | |||||||||
| A_12_P174679 | |||||||||
| Aff_C02F4.1 | |||||||||
| GPL13394_WBGene00000419 | |||||||||
| GPL13914_C02F4.1 | |||||||||
| GPL14144_C02F4.1_4689-4748_0.909_20_A | |||||||||
| GPL14144_C02F4.1_4947-5006_0.936_8_C | |||||||||
| GPL14144_C02F4.1_5230-5289_0.947_4_B | |||||||||
| GPL19516_CGZ0002043 | |||||||||
| GPL21109_C02F4.1 | |||||||||
| GPL3518_CE24779 | |||||||||
| GPL8304_CE_WBGene00000419_A | |||||||||
| GPL8304_CE_WBGene00000419_B | |||||||||
| GPL8304_CE_WBGene00000419_C | |||||||||
| GPL8673_C02F4_1P04684 | |||||||||
| GPL8673_C02F4_1P04896 | |||||||||
| GPL8673_C02F4_1P05223 | |||||||||
| GPL9450_C02F4.1 | |||||||||
| cea2.c.26134 | |||||||||
| Expression_cluster (132) | |||||||||
| Interaction (129) | |||||||||
| WBProcess | WBbiopr:00000013 | ||||||||
| WBbiopr:00000014 | |||||||||
| WBbiopr:00000015 | |||||||||
| WBbiopr:00000023 | |||||||||
| WBbiopr:00000107 | |||||||||
| Map_info | Map | IV | Position | 4.61067 | Error | 0.002681 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C02F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| ZK188 | |||||||||
| Mapping_data | Multi_point | 1517 | |||||||
| 1518 | |||||||||
| 1520 | |||||||||
| 1521 | |||||||||
| 1522 | |||||||||
| 1523 | |||||||||
| 1820 | |||||||||
| 1822 | |||||||||
| 4720 | |||||||||
| Pos_neg_data | 4243 | ||||||||
| Reference (191) | |||||||||
| Method | Gene |
