WormBase Tree Display for Gene: WBGene00001955

WBGene00001955 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F58A4
  Identity: Version: 1
    Name: CGC_name: hlh-11 Person_evidence: WBPerson346
      Sequence_name: F58A4.7
      Molecular_name (14)
      Other_name: CELE_F58A4.7 Accession_evidence: NDB BX284603
      Public_name: hlh-11
    DB_info: Database: AceView gene 3K715
        WormQTL gene WBGene00001955
        WormFlux gene WBGene00001955
        NDB locus_tag CELE_F58A4.7
        Panther gene CAEEL|WormBase=WBGene00001955|UniProtKB=P34474
          family PTHR15741
        NCBI gene 176360
        RefSeq protein NM_001379865.2
            NM_066728.8
            NM_066729.10
        SwissProt UniProtAcc P34474
        TREEFAM TREEFAM_ID TF316489
        UniProt_GCRP UniProtAcc P34474
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hlh
    Allele (90)
    Strain: WBStrain00032859
      WBStrain00030583
    RNASeq_FPKM (74)
    GO_annotation: 00042552
      00042553
      00042554
      00042555
      00042556
      00042557
      00042558
      00109807
    Ortholog (29)
    Paralog: WBGene00003510 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003378 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including excretory cell; intestinal cell; male-specific anatomical entity; non-striated muscle; and somatic nervous system. Is an ortholog of human TFAP4 (transcription factor AP-4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F58A4.7a
      F58A4.7b
      F58A4.7d
    Corresponding_CDS_history: F58A4.7a:wp88
      F58A4.7b:wp88
      F58A4.7c:wp275
    Corresponding_transcript: F58A4.7a.1
      F58A4.7a.2
      F58A4.7b.1
      F58A4.7b.2
      F58A4.7b.3
      F58A4.7b.4
      F58A4.7d.1
      F58A4.7d.2
    Other_sequence (26)
    Associated_feature (16)
    Transcription_factor: WBTranscriptionFactor000068
  Experimental_info: RNAi_result: WBRNAi00106987 Inferred_automatically: RNAi_primary
      WBRNAi00048934 Inferred_automatically: RNAi_primary
      WBRNAi00115659 Inferred_automatically: RNAi_primary
      WBRNAi00033064 Inferred_automatically: RNAi_primary
      WBRNAi00015934 Inferred_automatically: RNAi_primary
      WBRNAi00005984 Inferred_automatically: RNAi_primary
      WBRNAi00001428 Inferred_automatically: RNAi_primary
      WBRNAi00087728 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12824
      Expr15663
      Expr15976
      Expr1012609
      Expr1031137
      Expr1152672
      Expr1200145
      Expr2012491
      Expr2030730
    Drives_construct: WBCnstr00016793
      WBCnstr00018615
      WBCnstr00022887
      WBCnstr00022888
      WBCnstr00036563
      WBCnstr00042427
    Construct_product: WBCnstr00016793
      WBCnstr00016890
      WBCnstr00017353
      WBCnstr00022888
      WBCnstr00036563
      WBCnstr00042427
    Regulate_expr_cluster: WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060683:hlh-11(overexpression)_downregulated
      WBPaper00060683:hlh-11(overexpression)_upregulated
    Microarray_results: SMD_F58A4.7
      SMD_F58A4.7:2
      171841_x_at
      174449_at
      192781_s_at
      A_12_P101299
      A_12_P111541
      A_12_P158075
      Aff_F58A4.7
      GPL13394_WBGene00001955
      GPL13914_F58A4.7
      GPL14144_F58A4.7b_1189-1248_0.948_1_C
      GPL14144_F58A4.7b_336-395_0.847_50_B
      GPL14144_F58A4.7b_398-457_0.883_23_A
      GPL19516_CGZ0025124
      GPL19516_CGZ0025125
      GPL19516_CGZ0025126
      GPL19516_CGZ0025127
      GPL19516_CGZ0025128
      GPL21109_F58A4.7a
      GPL21109_F58A4.7d
      GPL3518_CE32194
      GPL8304_CE_WBGene00001955_A
      GPL8304_CE_WBGene00001955_B
      GPL8673_F58A4_7aP00235
      GPL8673_F58A4_7aP00351
      GPL8673_F58A4_7aP01073
      GPL8673_F58A4_7bP00235
      GPL8673_F58A4_7bP00356
      GPL8673_F58A4_7bP01079
      GPL8673_F58A4_7cP00235
      GPL8673_F58A4_7cP00351
      GPL8673_F58A4_7cP01073
      GPL8673_F58A4_7dP00073
      GPL8673_F58A4_7dP00235
      GPL8673_F58A4_7dP00350
      GPL9450_F58A4.7a
      GPL9450_F58A4.7b
      cea2.d.04175
      cea2.d.30162
    Expression_cluster (206)
    Interaction (14)
  Map_info: Map: III Position: 0.788189 Error: 0.007563
    Positive: Positive_clone: F58A4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00034761
    WBPaper00035331
    WBPaper00038491
    WBPaper00042204
    WBPaper00051774
    WBPaper00055090
    WBPaper00059477
    WBPaper00060501
    WBPaper00060683
    WBPaper00061738
    WBPaper00064592
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene