WormBase Tree Display for Gene: WBGene00006931
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WBGene00006931 | Evidence | Person_evidence | WBPerson342 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T20D3 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | vps | ||||||
Allele (38) | |||||||
Strain | WBStrain00034981 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00024445 | ||||||
00024446 | |||||||
00024447 | |||||||
00024448 | |||||||
00024449 | |||||||
00105901 | |||||||
00115046 | |||||||
Contained_in_operon | CEOP4328 | ||||||
Ortholog (42) | |||||||
Structured_description | Automated_description | Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Located in cytosol. Is an ortholog of human VPS26B (VPS26 retromer complex component B). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12711) | ||
DOID:8947 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12711) | ||||
Molecular_info | Corresponding_CDS | T20D3.7a | |||||
T20D3.7b | |||||||
T20D3.7c | |||||||
T20D3.7d | |||||||
Corresponding_CDS_history | T20D3.7:wp57 | ||||||
Corresponding_transcript | T20D3.7a.1 | ||||||
T20D3.7b.1 | |||||||
T20D3.7c.1 | |||||||
T20D3.7d.1 | |||||||
Other_sequence (58) | |||||||
Associated_feature | WBsf652055 | ||||||
WBsf230558 | |||||||
WBsf230559 | |||||||
Experimental_info | RNAi_result | WBRNAi00060741 | Inferred_automatically | RNAi_primary | |||
WBRNAi00101725 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00078329 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101726 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101722 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101723 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00081683 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00099091 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035703 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060740 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018903 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101728 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053616 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00097726 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101724 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018904 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060739 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053615 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101727 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060738 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101742 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr3629 | ||||||
Expr1025195 | |||||||
Expr1032946 | |||||||
Expr1157174 | |||||||
Expr1200265 | |||||||
Expr2018017 | |||||||
Expr2036154 | |||||||
Drives_construct | WBCnstr00034089 | ||||||
Construct_product | WBCnstr00011554 | ||||||
WBCnstr00034089 | |||||||
Microarray_results | SMD_T20D3.6 | ||||||
SMD_T20D3.7 | |||||||
175232_at | |||||||
189949_at | |||||||
A_12_P101170 | |||||||
Aff_T20D3.7 | |||||||
GPL13394_WBGene00006931 | |||||||
GPL13914_T20D3.7 | |||||||
GPL14144_T20D3.7a_1036-1095_0.932_4_A | |||||||
GPL14144_T20D3.7a_582-641_0.922_7_B | |||||||
GPL14144_T20D3.7a_796-855_0.900_14_C | |||||||
GPL19516_CGZ0035707 | |||||||
GPL19516_CGZ0035708 | |||||||
GPL19516_CGZ0035709 | |||||||
GPL19516_CGZ0035710 | |||||||
GPL21109_T20D3.7a | |||||||
GPL3518_CE28684 | |||||||
GPL8304_CE_WBGene00006931_A | |||||||
GPL8673_T20D3_7P00361 | |||||||
GPL8673_T20D3_7P00385 | |||||||
GPL8673_T20D3_7P00891 | |||||||
GPL9450_T20D3.7 | |||||||
cea2.p.98815 | |||||||
Expression_cluster (111) | |||||||
Interaction (23) | |||||||
WBProcess | WBbiopr:00000073 | ||||||
Map_info | Map | IV | Position | 4.18807 | Error | 0.002989 | |
Positive | Positive_clone | T20D3 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 5411 | |||||
5673 | |||||||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |