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WormBase Tree Display for Gene: WBGene00012245

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Name Class

WBGene00012245SMapS_parentSequenceCHROMOSOME_V
IdentityVersion3
NameCGC_namerbm-25Person_evidenceWBPerson260
Sequence_nameW04D2.6
Molecular_nameW04D2.6a
W04D2.6a.1
CE32000
W04D2.6b
CE46600
W04D2.6c
CE46822
W04D2.6b.1
W04D2.6c.1
Other_nameCELE_W04D2.6Accession_evidenceNDBBX284605
Public_namerbm-25
DB_infoDatabaseAceViewgene5M983
WormQTLgeneWBGene00012245
WormFluxgeneWBGene00012245
NDBlocus_tagCELE_W04D2.6
PanthergeneCAEEL|WormBase=WBGene00012245|UniProtKB=H2L2D0
familyPTHR18806
NCBIgene259655
RefSeqproteinNM_073733.6
NM_073732.8
NM_001269498.3
TREEFAMTREEFAM_IDTF320185
TrEMBLUniProtAccH2L2D0
Q8I4F3
G5EE97
UniProt_GCRPUniProtAccH2L2D0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
307 Dec 2017 13:24:47WBPerson1983Name_changeCGC_namerbm-25
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrbm
Allele (78)
StrainWBStrain00051860
RNASeq_FPKM (74)
GO_annotation00015678
00015679
00015680
00015681
00015682
00015683
00119399
00119400
Contained_in_operonCEOP5352
OrthologWBGene00052554Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00041855Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00142638Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00091419Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00181033Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00191147Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191062Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00226443Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g858Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1876Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12907Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4985Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18533Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9258Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9307Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2607Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24890Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18449Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00222.g7330Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-W04D2.6Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold33.g148Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00287.g8732Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19932Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018321Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00814Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6442Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50172810Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g16029Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00136078Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00243728Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288459Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0028474Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-5547Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-090312-142Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:23244Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1914289Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1308755Rattus norvegicusFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
RGD:1565486Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00012306Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019250Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionW04D2.6 encodes, by alternative splicing, two isoforms of an ortholog of human RBM25 (RED120); W04D2.6 is required (in conjunction with RSP-6) for normally rapid growth and (in conjunction with CPF-1 and F59A2.4) for oogenesis and embryonic viability; the long isoform of W04D2.6 has both an N-terminal RNA recognition domain (RRM) that is isoform-specific, and a C-terminal nucleic acid-binding domain (PWI) that is found in both isoforms; W04D2.6(RNAi) animals have a relatively subtle slow-growth phenotype, but display more severe synthetic phenotypes in double RNAi against both W04D2.6 and other putative splicing factors (CPF-1, RSP-6, or F59A2.4); W04D2.6 binds the N-terminal region of long UNC-13 isoforms in yeast two-hybrid assays; by orthology, W04D2.6 is expected to participate in splicing and 3'-end formation, and to bind RSR-1.Paper_evidenceWBPaper00027120
WBPaper00030790
Curator_confirmedWBPerson567
Date_last_updated20 Oct 2007 00:00:00
Automated_descriptionPredicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Is an ortholog of human RBM25 (RNA binding motif protein 25).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW04D2.6a
W04D2.6b
W04D2.6c
Corresponding_CDS_historyW04D2.6a:wp87
W04D2.6b:wp87
W04D2.6b:wp229
Corresponding_transcriptW04D2.6a.1
W04D2.6b.1
W04D2.6c.1
Other_sequence (38)
Associated_featureWBsf647380
WBsf655124
WBsf661906
WBsf661907
WBsf1001599
WBsf232661
WBsf232662
Experimental_infoRNAi_result (22)
Expr_patternExpr1020547
Expr1035424
Expr1158307
Expr2006771
Expr2024994
Drives_constructWBCnstr00030048
Construct_productWBCnstr00030048
Microarray_resultsSMD_W04D2.6
193824_s_at
A_12_P113616
Aff_W04D2.6
GPL13394_WBGene00012245
GPL13914_W04D2.6
GPL14144_W04D2.6a_134-193_0.758_101_B
GPL14144_W04D2.6a_2067-2126_0.955_1_C
GPL14144_W04D2.6a_298-357_0.798_81_A
GPL19516_CGZ0038337
GPL19516_CGZ0038338
GPL19516_CGZ0038339
GPL21109_W04D2.6a
GPL3518_CE32000
GPL8304_CE_WBGene00012245_A
GPL8304_CE_WBGene00012245_B
GPL8304_CE_WBGene00012245_C
GPL8673_W04D2_6aP00829
GPL8673_W04D2_6aP00844
GPL8673_W04D2_6aP01488
GPL8673_W04D2_6bP00355
GPL8673_W04D2_6bP00370
GPL8673_W04D2_6bP01014
GPL9450_W04D2.6a
cea2.3.26174
cea2.d.06303
Expression_cluster (128)
Interaction (28)
Map_infoMapVPosition4.41281
PositivePositive_cloneW04D2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027120
WBPaper00030790
WBPaper00031224
WBPaper00038491
WBPaper00046432
WBPaper00055090
WBPaper00062568
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene