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WormBase Tree Display for Gene: WBGene00004809

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Name Class

WBGene00004809EvidenceCGC_data_submission
SMapS_parentSequenceF44G3
IdentityVersion1
NameCGC_nameskr-3Person_evidenceWBPerson322
Sequence_nameF44G3.6
Molecular_nameF44G3.6
F44G3.6.1
CE16037
F44G3.6.2
Other_nameCELE_F44G3.6Accession_evidenceNDBBX284605
Public_nameskr-3
DB_infoDatabaseAceViewgene5Q603
WormQTLgeneWBGene00004809
WormFluxgeneWBGene00004809
NDBlocus_tagCELE_F44G3.6
PanthergeneCAEEL|WormBase=WBGene00004809|UniProtKB=G5EE67
familyPTHR11165
NCBIgene180081
RefSeqproteinNM_074658.7
TREEFAMTREEFAM_IDTF354233
TrEMBLUniProtAccG5EE67
UniProt_GCRPUniProtAccG5EE67
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (41)
StrainWBStrain00031385
RNASeq_FPKM (74)
GO_annotation00015495
00015496
00015497
00015498
00015499
00015500
00015501
00015502
00113216
OrthologWBGene00103360Pristionchus pacificusFrom_analysisOMA
CBOVI.g11746Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP28.g10982Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11197Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11199Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11200Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11201Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11203Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11204Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11205Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g12369Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g15964Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16751Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16784Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16788Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16789Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16790Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16819Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16820Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g19203Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6900Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6901Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6949Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6950Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g8946Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12347Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g12631Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g14020Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16985Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16986Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16987Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16988Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22950Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22951Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22952Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22954Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22955Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22956Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22957Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22958Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4094Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5423Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g12189Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12581Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g24524Caenorhabditis uteleiaFrom_analysisWormBase-Compara
Pan_g21634Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g17044Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246295Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258939Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285691Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002736Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0025637Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026174Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026175Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0031074Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026176Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-1707Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:10899Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:103575Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
RGD:1359648Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
Paralog (19)
Structured_descriptionConcise_descriptionskr-3 encodes a homolog of Skp1 in S. cerevisiae; skr-3 transcripts are upregulated in response to pathogenic bacteria, and skr-3(RNAi) results in enhanced susceptibility to infection.Paper_evidenceWBPaper00005128
WBPaper00005129
WBPaper00028482
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated12 Mar 2014 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in cytoplasm and nucleus. Expressed in intestine and pharynx. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF44G3.6
Corresponding_transcriptF44G3.6.1
F44G3.6.2
Other_sequenceAF440507
Associated_featureWBsf1002400
WBsf1021100
WBsf233078
WBsf233079
Experimental_infoRNAi_result (23)
Expr_patternExpr2439
Expr1027783
Expr1032388
Expr1151186
Expr2015851
Expr2034084
Drives_construct (2)
Construct_productWBCnstr00010829
WBCnstr00035373
Microarray_resultsSMD_F44G3.6
187985_at
A_12_P119398
Aff_F44G3.6
GPL14144_F44G3.6_370-429_0.970_1_A
GPL19516_CGZ0021742
GPL19516_CGZ0021743
GPL21109_F44G3.6.1
GPL3518_CE16037
GPL8304_CE_WBGene00004809_A
GPL8304_CE_WBGene00004809_B
GPL8673_F44G3_6P00062
GPL8673_F44G3_6P00071
GPL8673_F44G3_6P00144
GPL9450_F44G3.6
cea2.d.26114
cea2.d.26119
Expression_cluster (266)
Interaction (42)
Map_infoMapVPosition9.60545Error0.031822
PositivePositive_cloneF44G3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4529
4662
5313
Pseudo_map_position
Reference (14)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene