WormBase Tree Display for Gene: WBGene00004161
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| WBGene00004161 | SMap | S_parent | Sequence | Y111B2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-80 | Person_evidence | WBPerson625 | |||||
| Sequence_name | Y111B2A.14 | ||||||||
| Molecular_name | Y111B2A.14a | ||||||||
| Y111B2A.14a.1 | |||||||||
| CE44134 | |||||||||
| Y111B2A.14b | |||||||||
| CE43997 | |||||||||
| Y111B2A.14c | |||||||||
| CE50431 | |||||||||
| Y111B2A.14d | |||||||||
| CE50491 | |||||||||
| Y111B2A.14e | |||||||||
| CE50433 | |||||||||
| Y111B2A.14f | |||||||||
| CE50492 | |||||||||
| Y111B2A.14g | |||||||||
| CE50515 | |||||||||
| Y111B2A.14h | |||||||||
| CE50372 | |||||||||
| Y111B2A.14i | |||||||||
| CE50413 | |||||||||
| Y111B2A.14j | |||||||||
| CE50460 | |||||||||
| Y111B2A.14k | |||||||||
| CE50499 | |||||||||
| Y111B2A.14l | |||||||||
| CE50358 | |||||||||
| Y111B2A.14m | |||||||||
| CE50386 | |||||||||
| Y111B2A.14n | |||||||||
| CE50442 | |||||||||
| Y111B2A.14o | |||||||||
| CE50473 | |||||||||
| Y111B2A.14p | |||||||||
| CE50335 | |||||||||
| Y111B2A.14r | |||||||||
| CE50423 | |||||||||
| Y111B2A.14s | |||||||||
| CE53608 | |||||||||
| Y111B2A.14t | |||||||||
| CE54314 | |||||||||
| Y111B2A.14a.2 | |||||||||
| Y111B2A.14a.3 | |||||||||
| Y111B2A.14b.1 | |||||||||
| Y111B2A.14c.1 | |||||||||
| Y111B2A.14d.1 | |||||||||
| Y111B2A.14e.1 | |||||||||
| Y111B2A.14f.1 | |||||||||
| Y111B2A.14g.1 | |||||||||
| Y111B2A.14h.1 | |||||||||
| Y111B2A.14i.1 | |||||||||
| Y111B2A.14j.1 | |||||||||
| Y111B2A.14k.1 | |||||||||
| Y111B2A.14l.1 | |||||||||
| Y111B2A.14m.1 | |||||||||
| Y111B2A.14n.1 | |||||||||
| Y111B2A.14o.1 | |||||||||
| Y111B2A.14p.1 | |||||||||
| Y111B2A.14r.1 | |||||||||
| Y111B2A.14s.1 | |||||||||
| Y111B2A.14t.1 | |||||||||
| Other_name | Y111B2G.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y111B2G.e | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y111B2A.14 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pqn-80 | ||||||||
| DB_info | Database | AceView | gene | 3N739 | |||||
| WormQTL | gene | WBGene00004161 | |||||||
| WormFlux | gene | WBGene00004161 | |||||||
| NDB | locus_tag | CELE_Y111B2A.14 | |||||||
| Panther | gene | CAEEL|WormBase=Y111B2A.14c|UniProtKB=A0A0K3AX73 | |||||||
| family | PTHR23189 | ||||||||
| NCBI | gene | 176683 | |||||||
| RefSeq | protein (19) | ||||||||
| TREEFAM | TREEFAM_ID | TF343498 | |||||||
| TrEMBL | UniProtAcc (19) | ||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AX73 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (658) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3766 | ||||||||
| Ortholog (17) | |||||||||
| Paralog | WBGene00001081 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00003822 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in ABalppppppa; ABpraaapppa; and body wall muscle cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including skn-1; sir-2.1; and lin-39 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including rotenone; D-glucose; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: HPC2 and ubinuclein domain and Hpc2-related domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS (19) | ||||||||
| Corresponding_CDS_history | Y111B2A.14:wp59 | ||||||||
| Y111B2A.14:wp200 | |||||||||
| Y111B2A.14:wp206 | |||||||||
| Corresponding_transcript (21) | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature (20) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055343 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00085523 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064389 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036570 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026588 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055342 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055344 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007291 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009284 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019536 | ||||||||
| Expr1032028 | |||||||||
| Expr1158876 | |||||||||
| Expr2015073 | |||||||||
| Expr2033309 | |||||||||
| Microarray_results | SMD_Y111B2D.A | ||||||||
| SMD_Y111B2D.B | |||||||||
| 186777_s_at | |||||||||
| A_12_P117921 | |||||||||
| Aff_Y111B2A.CC | |||||||||
| Aff_Y111B2A.W | |||||||||
| Aff_Y111B2A.X | |||||||||
| Aff_Y111B2A.Y | |||||||||
| GPL14144_Y111B2A.14_256-315_0.791_71_B | |||||||||
| GPL14144_Y111B2A.14_365-424_0.798_65_A | |||||||||
| GPL14144_Y111B2A.14_82-141_0.782_82_C | |||||||||
| GPL19516_CGZ0042206 | |||||||||
| GPL19516_CGZ0042207 | |||||||||
| GPL19516_CGZ0042208 | |||||||||
| GPL19516_CGZ0042209 | |||||||||
| GPL21109_Y111B2A.14a.1 | |||||||||
| GPL3518_CE28848 | |||||||||
| GPL8304_CE_WBGene00004161_A | |||||||||
| GPL8304_CE_WBGene00004161_B | |||||||||
| GPL8673_Y111B2A_14P03530 | |||||||||
| GPL8673_Y111B2A_14P04091 | |||||||||
| GPL8673_Y111B2A_14P04383 | |||||||||
| GPL9450_Y111B2A.14 | |||||||||
| cea2.p.81047 | |||||||||
| Expression_cluster (62) | |||||||||
| SAGE_tag (23) | |||||||||
| Interaction | WBInteraction000502475 | ||||||||
| WBInteraction000575247 | |||||||||
| Map_info | Map | III | Position | 18.0442 | Error | 0.017944 | |||
| Positive | Positive_clone | Y111B2A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037357 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057644 | |||||||||
| WBPaper00059739 | |||||||||
| WBPaper00065394 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
