WormBase Tree Display for Gene: WBGene00021914

WBGene00021914 SMap: S_parent: Sequence: Y55B1BR
  Identity: Version: 3
    Name: CGC_name: magu-1 Person_evidence: WBPerson260
      Sequence_name: Y55B1BR.4
      Molecular_name: Y55B1BR.4
        Y55B1BR.4.1
        CE29125
      Other_name: CELE_Y55B1BR.4 Accession_evidence: NDB BX284603
      Public_name: magu-1
    DB_info: Database: AceView gene 3B88
            3B80
        WormQTL gene WBGene00021914
        WormFlux gene WBGene00021914
        NDB locus_tag CELE_Y55B1BR.4
        Panther gene CAEEL|WormBase=WBGene00021914|UniProtKB=Q95XW5
          family PTHR23122
        NCBI gene 190302
        RefSeq protein NM_064800.4
        TrEMBL UniProtAcc Q95XW5
        UniProt_GCRP UniProtAcc Q95XW5
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 07 Feb 2012 16:30:56 WBPerson2970 Name_change: CGC_name: magu-1
                Other_name: tag-117
        3 06 Sep 2021 12:27:39 WBPerson1983 Name_change: Other_name
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: magu
    Allele (146)
    RNASeq_FPKM (74)
    GO_annotation: 00089375
      00089376
      00089377
      00089378
      00089379
      00089380
      00089381
      00089382
      00089383
    Ortholog (43)
    Paralog: WBGene00002991 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006467 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00016841 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in cell-cell junction and plasma membrane. Expressed in arcade cell; intestine; and marginal cell. Is an ortholog of human MPP7 (MAGUK p55 scaffold protein 7). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y55B1BR.4
    Corresponding_transcript: Y55B1BR.4.1
    Other_sequence (27)
    Associated_feature: WBsf991067
      WBsf991068
      WBsf1014074
  Experimental_info: RNAi_result: WBRNAi00037511 Inferred_automatically: RNAi_primary
      WBRNAi00021014 Inferred_automatically: RNAi_primary
      WBRNAi00057510 Inferred_automatically: RNAi_primary
    Expr_pattern (6)
    Drives_construct: WBCnstr00018743
      WBCnstr00037821
    Construct_product: WBCnstr00037821
    Microarray_results (22)
    Expression_cluster (64)
    Interaction: WBInteraction000111876
      WBInteraction000119532
      WBInteraction000134241
      WBInteraction000136468
      WBInteraction000138924
      WBInteraction000145545
      WBInteraction000146736
      WBInteraction000152656
      WBInteraction000153062
      WBInteraction000157169
      WBInteraction000157677
      WBInteraction000164104
      WBInteraction000172013
      WBInteraction000184719
      WBInteraction000184748
      WBInteraction000188222
      WBInteraction000192346
      WBInteraction000194070
      WBInteraction000197481
      WBInteraction000201075
      WBInteraction000208059
      WBInteraction000211381
      WBInteraction000211460
      WBInteraction000213334
      WBInteraction000213873
      WBInteraction000215394
      WBInteraction000216653
      WBInteraction000219995
      WBInteraction000224643
      WBInteraction000230569
      WBInteraction000237025
      WBInteraction000242854
      WBInteraction000245513
      WBInteraction000249898
      WBInteraction000251417
      WBInteraction000254345
      WBInteraction000259110
      WBInteraction000288893
      WBInteraction000309147
      WBInteraction000309549
      WBInteraction000310585
      WBInteraction000314539
      WBInteraction000322218
      WBInteraction000346675
      WBInteraction000351241
      WBInteraction000351936
      WBInteraction000359283
      WBInteraction000370562
      WBInteraction000410023
      WBInteraction000414048
      WBInteraction000420675
      WBInteraction000450432
      WBInteraction000459465
      WBInteraction000463265
      WBInteraction000463445
      WBInteraction000467156
      WBInteraction000467857
      WBInteraction000467893
      WBInteraction000523743
      WBInteraction000523744
      WBInteraction000523745
      WBInteraction000523746
      WBInteraction000523747
      WBInteraction000523748
      WBInteraction000544081
      WBInteraction000544230
      WBInteraction000544254
      WBInteraction000544255
      WBInteraction000544256
      WBInteraction000544308
      WBInteraction000544309
      WBInteraction000544310
      WBInteraction000544311
      WBInteraction000544312
      WBInteraction000544532
      WBInteraction000544533
      WBInteraction000544625
      WBInteraction000544732
      WBInteraction000546562
      WBInteraction000546917
      WBInteraction000546918
      WBInteraction000546919
      WBInteraction000546920
      WBInteraction000546921
      WBInteraction000546922
      WBInteraction000546923
      WBInteraction000546924
      WBInteraction000546925
      WBInteraction000546926
      WBInteraction000556645
      WBInteraction000556646
      WBInteraction000556647
      WBInteraction000556648
      WBInteraction000566487
      WBInteraction000566766
      WBInteraction000578788
  Map_info: Map: III Position: -26.8441
    Positive: Positive_clone: Y55B1BR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032233
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    Removed tag-117 as an other name as this was causing confusuon as the literature suggests it should be associated with magu-2 and not magu-1. Curator_confirmed: WBPerson1983
  Method: Gene